View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_high_10 (Length: 403)
Name: NF7294_high_10
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 5420525 - 5420150
Alignment:
| Q |
8 |
agattattctagagcaaaagagattattcaaattcaacagttaggttcatattgctgtataatatagaagttgtagaggtctctaaaactgcacggtaat |
107 |
Q |
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| T |
5420525 |
agattattctagagcaaaagagattattcaa------cagttaggttcatattgctgtataatatagaagttgtagaggtctctaaaactgcacggtaat |
5420432 |
T |
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| Q |
108 |
tgcaattttagccgtattggatgcattttgccgcgatataattgtccaaaatgtc----actaggccgtaatctcaatttagaattatggttactggtta |
203 |
Q |
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| T |
5420431 |
tgcaattttagccgtattggatgcattttgccgcgatataattgtccaaaatgtctgtcactaggccgtaatcacaatttagaattatggttgctggtta |
5420332 |
T |
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| Q |
204 |
tgcttacaaatatgcagattaaatcacactcaagtatagaaaatacagcaatgcaaacaaaatgcttgctgtcaaagataccaagtctatctttaaaggg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5420331 |
tgcttacaaatatgcagattaaatcacactcaagtatagaaaatacagcaatgcaaacaaaatgcttgctgtcaaagataccaattctatctttaaaggg |
5420232 |
T |
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| Q |
304 |
tattctcaagcagcctaaaaggaaaatttgtttatttaaaattaagaaattaaaagtttacattacaaacagatacaatcat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420231 |
tattctcaagcagcctaaaaggaaaatttgtttatttaaaattaagaaattaaaagtttacattacaaacagatacaatcat |
5420150 |
T |
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