View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_high_16 (Length: 343)
Name: NF7294_high_16
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 32698789 - 32698480
Alignment:
| Q |
21 |
attcaatcattcatcaattcattttcttcaaattgaatttctagaaaacaaaattatgggaaaacggcatggtcgaaattcagattgatatccatccaaa |
120 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32698789 |
attcaatcattcatcaattcattttcttcaaatcgaatttctagaaaacaaaattatgggaaaacggcatggtcgaaattcagatcgatatccatccaaa |
32698690 |
T |
|
| Q |
121 |
tccctcttgttttattatttggatccgcctccttgtgatatgcggccgccgccgcaatcgagtaggcctctatcannnnnnnnnnnnnatctccttttca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
32698689 |
tccctcttgttttattatttggatccgcctccttgtgatatgcggccgccgccgcaatcaagtaggcctctatcattttcgattttttatctccttttca |
32698590 |
T |
|
| Q |
221 |
tatcaatccatcgtggtcgttgccgtgcgcttgtgtgcttcatgtttctctgattttctgctgttttgttgtttttgttcgttgacaaacaattctagct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32698589 |
tatcaatccatcgtggtcgttgccgtgcgcttgtgtgcttcatgtttctctgattttctgctgttttgttgtttttgttcgttgacaaacaattctagct |
32698490 |
T |
|
| Q |
321 |
tctgtgatgt |
330 |
Q |
| |
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|||||||||| |
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| T |
32698489 |
tctgtgatgt |
32698480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 5610967 - 5610673
Alignment:
| Q |
21 |
attcaatcattcatcaattcattttcttcaaattgaatttctagaaaacaaaattatgggaaaacggcatggtcgaaattcagattgatatccatccaaa |
120 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
5610967 |
attcaatcatttatcaattcattttcttcaaatcgaatttctagaaaacaaaattatggaaaaacggcatggtcgaaattcagatcgatatccatccaaa |
5610868 |
T |
|
| Q |
121 |
tccctcttgttttattatttggatccgcctccttgtgatatgcggccgccgccgcaatcgagtaggcctctatcannnnnnnnnnnnnatctccttttca |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5610867 |
tccctcttgttttattatttggatccgcctccttgtgatatgcggccgccgccgcaatcgagtaggcctctatcattttcgattttttatctccttttca |
5610768 |
T |
|
| Q |
221 |
tatcaatccatcgtggtcgttgccgtgcgcttgtgtgcttcatgtttctctgattttctgctgttttgttgtttttgttcgttgacaaacaattc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5610767 |
tatcaatccatcgtggtcgttgccgtgcgcttgtgtgcttcatatttctttgattttctgctgttttgttgtttttgttcgttgacaaacaattc |
5610673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 30512879 - 30512590
Alignment:
| Q |
21 |
attcaatcattcatcaattcattttcttcaaattgaatttctagaaaacaaaattatgggaaaacggcatggtcgaaattcagattgatatccatccaaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||||| |||| ||||||| | | |||||||||||| ||||||||||| || ||||||||||| |
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| T |
30512879 |
attcaatcattcatcaattaattttcctcaaatcgaatttctggaaatcaaaattctag-aaaacggcatggctgaaattcagatcgaaatccatccaaa |
30512781 |
T |
|
| Q |
121 |
tccctcttgttttattatttggatccgcctccttgtgatatgcggccgccgccgcaatcgagtaggcctctatcannnnnnnnnnnnnatctccttttca |
220 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||| |||| |||||| |||||||||| ||||||||| ||||| |||||| |
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| T |
30512780 |
tccctctcgttttattatctggatccgcctccttgtgatctgcg---gccgccacaatcgagtatgcctctatcgttttcgatttctgatctcattttca |
30512684 |
T |
|
| Q |
221 |
tatcaatccatcgtggtcgttgccgtgcgcttgtgtgcttcatgtttctctgattttctgctgttttgttgtttttgttcgttgacaaacaattc |
315 |
Q |
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||||| ||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
30512683 |
catcaagccatcgtggtc-ttgtcgtgcgcttgtgttgttcacgtttctctgattttctgctattctattgtttttgttcgttgacaaacaattc |
30512590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 9454660 - 9454611
Alignment:
| Q |
21 |
attcaatcattcatcaattcattttcttcaaattgaatttctagaaaaca |
70 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||| || | ||||||| |
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| T |
9454660 |
attcaatccttcatcaattcattttcttcaaatcgaaattttggaaaaca |
9454611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 50563494 - 50563443
Alignment:
| Q |
21 |
attcaatcattcatcaattcattttcttcaaattgaatttctagaaaacaaa |
72 |
Q |
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|||||||| |||||||||||||||||||||||| ||| || | ||||||||| |
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| T |
50563494 |
attcaatccttcatcaattcattttcttcaaatcgaaattttggaaaacaaa |
50563443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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