View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_high_17 (Length: 340)
Name: NF7294_high_17
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 5969913 - 5970197
Alignment:
| Q |
18 |
agcaaattggattagggattgtgatagggaatagtgttaggggtatttgatttgaaacattttgaaaaacaaaagaaggaaaaatagtacatgatatatc |
117 |
Q |
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| T |
5969913 |
agcaaattggattagggattgtgatagggaatagtgttagg--tatttgatttgaaacattttgaaaaacaaaagaaggaaaaatagtacatgatatatc |
5970010 |
T |
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| Q |
118 |
cttgacttgttggatannnnnnnnnnnnnnnnnnnnncatatgtgttatgtaaagactataatattgtttcaaagtttaatttttatatgtatatgacta |
217 |
Q |
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| T |
5970011 |
cttgacttgttggatatttttttattttattttcat--atatgtgttatgtaaagactataatattgcttcaaagtttaatttgtatatgtatatgacta |
5970108 |
T |
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| Q |
218 |
gagaattactagataatgttagagtttgttacaagttggttaacattagttacaaattagttgaagtttgtttgtttaggtaggatcac |
306 |
Q |
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| T |
5970109 |
gagaattactagataatgttagagtttgttacaagttggttaacattagttacaaattagttgaagtttgtttgtttaggtaggatcac |
5970197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 4365549 - 4365618
Alignment:
| Q |
245 |
gttacaagttggttaacattagttacaaattagttgaagtttgtttgtttaggtaggatcactatataaa |
314 |
Q |
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| T |
4365549 |
gttacaagttggtttatattagtgacaaattagtttaagtttgttagtttagttaggatcattatataaa |
4365618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 35785807 - 35785841
Alignment:
| Q |
262 |
attagttacaaattagttgaagtttgtttgtttag |
296 |
Q |
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| T |
35785807 |
attagttacaaattagttgaagtttgttagtttag |
35785841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 32436491 - 32436427
Alignment:
| Q |
245 |
gttacaagttggttaacattagttacaaattagttgaagtttgtttgtttaggtaggatcactat |
309 |
Q |
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|||| ||| ||||||| ||||||| ||||||||||||| | |||| ||||| |||||||||||| |
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| T |
32436491 |
gttataagatggttaatattagttgcaaattagttgaattgtgttagtttaattaggatcactat |
32436427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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