View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_high_18 (Length: 320)
Name: NF7294_high_18
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 65 - 258
Target Start/End: Complemental strand, 28435323 - 28435131
Alignment:
| Q |
65 |
aggaaataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacacgaagaatttttgcgagatcactttggtggaagtgtt |
164 |
Q |
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| T |
28435323 |
aggaaataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacacgaagaatttgtgtgagatcactttggtggaa-tgtt |
28435225 |
T |
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| Q |
165 |
tcatgtattacatgaattagagcaaacaaaaattctgagacatgtaagaactatggaaggtatatatttagtcaaatcatgaaaaacagcaacg |
258 |
Q |
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| T |
28435224 |
tcatgtattacatgaattagagcaaacaaaaattttgagacatgtaagaactatggaaggtatatatttagtcaaatcatgaaaaacagcaacg |
28435131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28435438 - 28435378
Alignment:
| Q |
1 |
gatgaaaggatttgaagcatgcaaatgttgaatatttaatgagaattcgagttacaaagaa |
61 |
Q |
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| T |
28435438 |
gatgaaaggatttgaagcatgcaaatgttgaatatttaatgagagtttgagttacaaagaa |
28435378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 53969049 - 53969109
Alignment:
| Q |
68 |
aaataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacac |
128 |
Q |
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| T |
53969049 |
aaataatacttgtaacggtacatgaaagatgtgacgcttttatagctgtcttggagaacac |
53969109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 53968883 - 53968948
Alignment:
| Q |
3 |
tgaaaggatttgaagcatgcaaatgttgaatatttaatgagaattcgagttacaaagaatgaagga |
68 |
Q |
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| T |
53968883 |
tgaaaggatttgaagtatgaaagtgttgaatttaataagagagttcgagttacaaagaatgaagga |
53968948 |
T |
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