View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7294_high_23 (Length: 251)
Name: NF7294_high_23
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_23 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 120709 - 120941
Alignment:
| Q |
1 |
aaaaacacaaatgctcttctgtctaaatgggtcgactacatgaaccatttaaaactcaggagttaaatttagttttttattagaaacacagagaatgacc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
120709 |
aaaaacacaaatgctcttccgtctaaatgggtcgactacatgaaccatttgaaactcaggagttaaatttagttttttattagaaacacagagaatgacc |
120808 |
T |
|
| Q |
101 |
aatgaaggaaaaaattgatacaactatatgaagaaaactgcacattggaaataaaatataattacgtcaaaaatcaaaacaaacgaccattcgtaacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
120809 |
aatgaaggaaaaaattgatacaactatatgaagaaaactgcacattggaaataaaatataattacgtcaaaaatcaaaacaaacgaccattcgtaacatt |
120908 |
T |
|
| Q |
201 |
ttaataacaaaaagaacataacaatacaagatt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
120909 |
ttaataacaaaaagaacataacaatacaagatt |
120941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 28130 - 27891
Alignment:
| Q |
1 |
aaaaacacaaatgct-cttctgtctaaatggg-tcgactacatgaaccatttaaaactcaggagttaaatttagtttttt-attagaaacacagagaatg |
97 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||| |
|
|
| T |
28130 |
aaaaacacaaatgcttcttccgtctaaatggggtcgactacatgaaccatttaaaactcaagaattgcatttagtttttttattagaaacacagagaatg |
28031 |
T |
|
| Q |
98 |
accaatgaaggaaaaaattgatacaactatatgaagaaaa----ctgcacattggaaataaaatataattacgtcaaaaatcaaaacaaacgaccattcg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030 |
accaatgaaggaaaaaattgatacaactatatgaagaaaattgactgcacattggaaataaaatataattacgtcaaaaatcaaaacaaacgaccattcg |
27931 |
T |
|
| Q |
194 |
taacattttaataacaaaaagaacataacaatacaagatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27930 |
taacattttaataacaaaaagaacataacaatacaagatt |
27891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 574 - 707
Alignment:
| Q |
92 |
agaatgaccaatgaaggaaaaaattgatacaactatatgaagaaaa----ctgcacattggaaataaaatataattacgtcaaaaatcaaaacaaacgac |
187 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||| |||||||||||| |||||||||||||||||||||||| || | ||| ||||||||||| | || |
|
|
| T |
574 |
agaatgaccaatgaatgaaaaaaatcatacaacaatatgaagaaaattgactgcacattggaaataaaatataactaagacaataatcaaaacaatcaac |
673 |
T |
|
| Q |
188 |
cattcgtaacattttaataacaaaaagaacataa |
221 |
Q |
| |
|
|||| | |||| ||||||||||| ||| |||| |
|
|
| T |
674 |
catttcgatcattataataacaaaatgaaaataa |
707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 507 - 569
Alignment:
| Q |
1 |
aaaaacacaaatgct-cttctgtctaaatgggt-cgactacatgaaccatttaaaactcagga |
61 |
Q |
| |
|
||||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
507 |
aaaaacacaaatgcttcttccatctaaatgggaacaactacatgaaccatttaaaactcagga |
569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University