View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_high_5 (Length: 489)
Name: NF7294_high_5
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 144 - 479
Target Start/End: Complemental strand, 4143783 - 4143449
Alignment:
| Q |
144 |
ataccaattcatttccacatactggcataaatttttatgtaaaagtattaaactaatgaacaatgcatattccaatcacacgtcaattttaagaactcta |
243 |
Q |
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| T |
4143783 |
ataccaattcatttccacatactggcataactttttatgtaaaagtattaaactaatgaacaatgcatattccaatcacacgtcaattttaagaactcta |
4143684 |
T |
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| Q |
244 |
gaaatgtgattcctcaatcctcaatgttgaaggtgtgcaacaaattacacacaaaaactacataccnnnnnnnnnnnntcctataagaaaagttgtgaaa |
343 |
Q |
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| T |
4143683 |
gaaatgtgattcctcagtcctcaatgttgaaggtgtgaaacaaattacacacaaaaactacataccaaaaataaaaaatcctataagaaaagttgtgaaa |
4143584 |
T |
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| Q |
344 |
gaactcaaactaaggtttggaagactatacacttcacaatggatgcttgtgggatccactacggtgccagaagtttcttgattccaattttctgctcaga |
443 |
Q |
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| T |
4143583 |
gaactcaaactaaggtttggaagactatacacttcacaatggatgcttgt-ggatccactacggtgccagaagtttcttgattccaattttctgctcaga |
4143485 |
T |
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| Q |
444 |
agtcaaccttgctggaaacttgatattgaatttgat |
479 |
Q |
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| T |
4143484 |
agtcaaccttgctggaaacttgatattgaatttgat |
4143449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 4143934 - 4143803
Alignment:
| Q |
45 |
gatcagtttatgattttatcgaactccctggtaattttttcattttccacattagttatttatctcattctgtataannnnnnngtttcataatgatata |
144 |
Q |
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| T |
4143934 |
gatcagtttatgattttatcgaactccccggtaattttt-cattttccacgttagttatttatctcattctgtataattattttctttcataatg--ata |
4143838 |
T |
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| Q |
145 |
taccaattcatttccacatactggcataaattttt |
179 |
Q |
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| T |
4143837 |
taccaattcgtttccacatactggcataacttttt |
4143803 |
T |
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