View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_high_9 (Length: 410)
Name: NF7294_high_9
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 23369215 - 23369113
Alignment:
| Q |
147 |
attaatcaggatcttagatataaccctatatagggatgccaattttctcctatgaatggggaccccctaataataacctcatatgtaggggattaaactc |
246 |
Q |
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| T |
23369215 |
attaatcaggaacttagatacaaccctatatagggatgccaattttctcctatgaatgggggacccctaataataacctcatatgtagggggttaaactc |
23369116 |
T |
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| Q |
247 |
aat |
249 |
Q |
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||| |
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| T |
23369115 |
aat |
23369113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 23369461 - 23369404
Alignment:
| Q |
94 |
gtcatttaacacggtaattctaacattttgtttcaaatttgttcgcgtattagattaa |
151 |
Q |
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| T |
23369461 |
gtcatttaacacggtaattctaacattttgtttcaaatttgttcgcgtattagattaa |
23369404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 23369010 - 23368969
Alignment:
| Q |
360 |
gcaaatattacttaaagagattccaacaatatatcaaatgct |
401 |
Q |
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| T |
23369010 |
gcaaatattccttaaagagattccaacaatatatcaaatgct |
23368969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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