View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7294_low_1 (Length: 805)

Name: NF7294_low_1
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7294_low_1
NF7294_low_1
[»] chr3 (12 HSPs)
chr3 (79-786)||(45650136-45650831)
chr3 (403-783)||(45642881-45643255)
chr3 (408-613)||(45886883-45887094)
chr3 (412-613)||(45703075-45703282)
chr3 (646-786)||(45703423-45703563)
chr3 (646-786)||(45887229-45887369)
chr3 (95-258)||(45643339-45643502)
chr3 (74-258)||(45702807-45702991)
chr3 (74-258)||(45886619-45886803)
chr3 (8-56)||(45650828-45650876)
chr3 (617-681)||(45703307-45703371)
chr3 (636-681)||(45887132-45887177)
[»] chr6 (1 HSPs)
chr6 (356-525)||(30054756-30054921)
[»] chr4 (2 HSPs)
chr4 (399-475)||(1192198-1192273)
chr4 (696-786)||(1193586-1193679)


Alignment Details
Target: chr3 (Bit Score: 610; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 79 - 786
Target Start/End: Complemental strand, 45650831 - 45650136
Alignment:
Q  79 atctcttaagatgacattctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttggtgat 178  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650831 atctcttaagatgacattctctaatcctttgattttaggcttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttggtgat 45650732  T
Q  179 aaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaaatattatttattctttcttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650731 aaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaaatattatttattctttcttt 45650632  T
Q  279 gttagacacaattcaataatgggaagaaagcttttaata---ttgtaaactgaaaaatagttaattgaagttttgtcaattttagttttatattgtaaac 375  Q
    ||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||            
T  45650631 gttagacacaattcaataatgggaagaaagcttataataatattgtaaactgaaaaatagttaattgaagttttgtcaattttagttttata-------- 45650540  T
Q  376 acaatttccaaaactaatgtatatatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaa 475  Q
       |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650539 ---atttccaaaactaatgtat----gtaactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaa 45650447  T
Q  476 tcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctg 575  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650446 tcatgcacaactggaaattcaattagtactgacagcagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctg 45650347  T
Q  576 gacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggttc 675  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45650346 gacattgcacaggtggcatgaaactttctgttaaagttaaggcttcttctagtgcttcttctgctccttctgcaacaccatcgccatcagggaaaggttc 45650247  T
Q  676 accttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttgctttatttttc 775  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45650246 accttctgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaattgttgctttatttttc 45650147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 403 - 783
Target Start/End: Complemental strand, 45643255 - 45642881
Alignment:
Q  403 taactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagt 502  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45643255 taactttattatgacagtgttcaactatgtagctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagt 45643156  T
Q  503 actgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaacttt 602  Q
    || ||||| || |||||||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||||||||||||  |||||||||||| |    
T  45643155 acagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactct 45643056  T
Q  603 ctgttaaggttaagtcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctg---c 699  Q
     ||||||||||||| ||||||         || |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |   |    
T  45643055 ttgttaaggttaagccttctt---------ctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaac 45642965  T
Q  700 aaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttgctttatttttcactgtttc 783  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||  |||||||||| ||||||||| ||||||||||||||    
T  45642964 aaccaccaccactactcctaccatacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttc 45642881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 408 - 613
Target Start/End: Original strand, 45886883 - 45887094
Alignment:
Q  408 ttactatgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtac 504  Q
    ||||||||||||| |||||||||| |||||||   |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  45886883 ttactatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtac 45886982  T
Q  505 tgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatgaaactt 601  Q
     ||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |   ||||||||||||||     
T  45886983 agacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactc 45887082  T
Q  602 tctgttaaggtt 613  Q
    ||||||||||||    
T  45887083 tctgttaaggtt 45887094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 412 - 613
Target Start/End: Original strand, 45703075 - 45703282
Alignment:
Q  412 tatgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgac 508  Q
    ||||||||| |||||||||| |||||||   |||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||||||| |||    
T  45703075 tatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattcaattagtacagac 45703174  T
Q  509 agcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatgaaactttctg 605  Q
     | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |   |||||||||||||| ||||    
T  45703175 ggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctg 45703274  T
Q  606 ttaaggtt 613  Q
    ||||||||    
T  45703275 ttaaggtt 45703282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 646 - 786
Target Start/End: Original strand, 45703423 - 45703563
Alignment:
Q  646 tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact 745  Q
    |||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |||||||| |||||| |||  ||||||||||||||| |||||    
T  45703423 tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact 45703522  T
Q  746 agtatctcaccaaatgttgctttatttttcactgtttcatg 786  Q
     |||||||||||| |||||| || ||||| | |||||||||    
T  45703523 tgtatctcaccaattgttgccttcttttttattgtttcatg 45703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 646 - 786
Target Start/End: Original strand, 45887229 - 45887369
Alignment:
Q  646 tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact 745  Q
    |||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |||||||| |||||| |||  ||||||||||||||| |||||    
T  45887229 tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact 45887328  T
Q  746 agtatctcaccaaatgttgctttatttttcactgtttcatg 786  Q
     |||||||||||| |||||| || ||||| | |||||||||    
T  45887329 tgtatctcaccaattgttgccttcttttttattgtttcatg 45887369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 45643502 - 45643339
Alignment:
Q  95 ttctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttggtgataaatcaggttgggcaa 194  Q
    ||||||||| ||||| ||||| | ||||||||||  |||| | || || |||| ||||| |||||   |||||  ||||| |||   | ||||||| ||     
T  45643502 ttctctaatgctttggttttatgcttctttttagctatcactatgccattgccgactctggcaacaaaccacattgttggagatggtttaggttggacag 45643403  T
Q  195 ttggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaa 258  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  45643402 ttggtcctgattataacacatggactagtgacaaaacctttgcagttggtgacagtctcggtaa 45643339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 45702807 - 45702991
Alignment:
Q  74 tcactatctcttaagatgacattctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttg 173  Q
    |||| |||| |||| |||||||||| |||  ||||| ||||| | |||||||||| ||||| | || || |||| ||||| |||||   |||||  ||||    
T  45702807 tcacaatctattaaaatgacattctttaaggctttggttttatgcttctttttagcgatcactatgccattgccgactctggcaacaaaccacattgttg 45702906  T
Q  174 gtgataaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaa 258  Q
    | |||   | ||||||| || ||| |||||||||||  |||||||||||||||||||| |||| |||||||||||||||||||||    
T  45702907 gagatggtttaggttggacagttgattctgattatacaacatgggctagtgacaaaacctttgtagttggtgacagtctcggtaa 45702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 45886619 - 45886803
Alignment:
Q  74 tcactatctcttaagatgacattctctaatcctttgattttaggtttctttttagtgatcaatgtggcagtgccaactcttgcaactgtccacaccgttg 173  Q
    |||| |||| |||| |||||||||| |||  ||||| ||||| | |||||||||| ||||| | || || |||| ||||| |||||   |||||  ||||    
T  45886619 tcacaatctattaaaatgacattctttaaggctttggttttatgcttctttttagcgatcactatgccattgccgactctggcaacaaaccacattgttg 45886718  T
Q  174 gtgataaatcaggttgggcaattggttctgattataacacatgggctagtgacaaaacatttgcagttggtgacagtctcggtaa 258  Q
    | |||   | ||||||| || ||| |||||||||||  |||||||||||||||||||| |||| |||||||||||||||||||||    
T  45886719 gagatggtttaggttggacagttgattctgattatacaacatgggctagtgacaaaacctttgtagttggtgacagtctcggtaa 45886803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 45650876 - 45650828
Alignment:
Q  8 ccaacaatatcctcatagcctcattcctttagaaaaaacatagccatct 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45650876 ccaacaatatcctcatagcctccttcctttagaaaaaacatagccatct 45650828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 681
Target Start/End: Original strand, 45703307 - 45703371
Alignment:
Q  617 tcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc 681  Q
    |||||||||  | || ||||||||||||||||  ||||||| |||||||| ||||||||||||||    
T  45703307 tcttcttcttcttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc 45703371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 681
Target Start/End: Original strand, 45887132 - 45887177
Alignment:
Q  636 ctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc 681  Q
    |||||||||||||  ||||||| |||||||| ||||||||||||||    
T  45887132 ctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc 45887177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 356 - 525
Target Start/End: Complemental strand, 30054921 - 30054756
Alignment:
Q  356 tttagttttatattgtaaacacaatttccaaaactaatgtatatatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaag 455  Q
    |||||||||  |||| || || ||||| ||||||||||||||    ||||||||||||||||| | ||||||||||||   ||||||||||||||| |||    
T  30054921 tttagttttcaattgcaaccataatttacaaaactaatgtat----gtaactttactatgacaatgttcaactatggaatcgggcacacagtggattaag 30054826  T
Q  456 ttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac 525  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||| ||||| || |||||||||||    
T  30054825 ttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac 30054756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 1192198 - 1192273
Alignment:
Q  399 tatgtaactttactatgacagtattcaactatggagctgggcacacagtggatgaagttaaagaaagtgactataaa 475  Q
    |||||||||||||| |||  || ||||||||||||| |||||||||||||||| |||| ||| ||||||||||||||    
T  1192198 tatgtaactttactttgattgtgttcaactatggagttgggcacacagtggattaagtcaaa-aaagtgactataaa 1192273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 696 - 786
Target Start/End: Original strand, 1193586 - 1193679
Alignment:
Q  696 ctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttg---ctttatttttcactgtttcatg 786  Q
    ||||||| ||||||||||||||| | || ||||||||||||||| |||||||  ||| ||||| |||||   |||||||||||| |||||||||    
T  1193586 ctgcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcatg 1193679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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