View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_12 (Length: 403)
Name: NF7294_low_12
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 22772843 - 22772472
Alignment:
| Q |
19 |
gtattggcttggattttgtcaatcctcattgcctgctgaagacag--ttaacttttgttgattacctagggtatatctggaaatgttggtcgaaattcag |
116 |
Q |
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| T |
22772843 |
gtattggcttggattttgtcaatcctcattgcctgctgaagacagagttaacttttgttgattacctagggtatatctggaaatgttggtcgaaattcag |
22772744 |
T |
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| Q |
117 |
tggcgataaggacatgtcatgcattatttatgggcagtggatcaatattttccaggcacataagtttaatgaaggtacattagttaagtttggtgtgaca |
216 |
Q |
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| T |
22772743 |
tggcgataaggacatgtcatgcattatttatgggcagtggatcaatattttccaggcacataagtttaatgaaggtacattagttaagtttggtgtgaca |
22772644 |
T |
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| Q |
217 |
gatgttgccaacaataagataatctacattcggccgcctccgatgttggttctccgtacaaaactgtgttcatcggtcattctcggttcaagtggtcctg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772643 |
gatgttgccaacaataagataatctacattcggccgcctccgatgttggttctccatacaaaactgtgttcatcggtcattctcggttcaagtggtcctg |
22772544 |
T |
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| Q |
317 |
tttatcaaatttagcattatttctaaaataattaaggatgttgtgatgctatctatgttttcttaatgtcat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772543 |
tttatcaaatttagcattatttctaaaataattaaggatgttgtgatgctatctatgttttcttaatgtcat |
22772472 |
T |
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