View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_14 (Length: 386)
Name: NF7294_low_14
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 27 - 367
Target Start/End: Complemental strand, 23368978 - 23368638
Alignment:
| Q |
27 |
atcaaatgctacaacctcggaattacaatatggaatctcctaaatccaaacataatcatagttggaagaaattgcaaattttgttaaataacattcaact |
126 |
Q |
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| T |
23368978 |
atcaaatgctacaacctcggaattacaatatggaatctcctaaatccaaacataatcatagttggaagaaattgcaaattttgctaaataacattcaact |
23368879 |
T |
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| Q |
127 |
tgattagctacgcacattacttgagaacaacaatgttgttaaaattggagtttatcttgatgtgattagcataattattgtttccaaataggacgatgcc |
226 |
Q |
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| T |
23368878 |
tgattagcgacacacattacttgagaacaacattgtcgttaaaattggagcttatcttgatgtgattagcataattattgtttccaaataggacgatgcc |
23368779 |
T |
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| Q |
227 |
gtaagatatcattgatatctatgatgacatagtcgaagtctaattctgctactaattttaagaatatctcttctgtgaattccaatcatttcaacaacgt |
326 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
23368778 |
gtaagatatcattgatatctatgatgacgtagtcgaagtctaattctcctactaattttaagaacatctcttttgtgaattccaatcatttcaacaacgt |
23368679 |
T |
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| Q |
327 |
catttcctttgcaatatttaaaccaagcaggatcaacatac |
367 |
Q |
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| |||||| | |||||||||||||||| ||||||||||||| |
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| T |
23368678 |
cgtttcctctacaatatttaaaccaagtaggatcaacatac |
23368638 |
T |
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