View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7294_low_16 (Length: 349)

Name: NF7294_low_16
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7294_low_16
NF7294_low_16
[»] chr5 (3 HSPs)
chr5 (28-333)||(38921634-38921939)
chr5 (25-207)||(35968322-35968504)
chr5 (255-311)||(35968510-35968566)
[»] chr7 (4 HSPs)
chr7 (25-333)||(41739801-41740109)
chr7 (197-227)||(38516924-38516954)
chr7 (197-227)||(45291650-45291680)
chr7 (209-295)||(45295793-45295878)
[»] chr4 (3 HSPs)
chr4 (31-333)||(30830105-30830407)
chr4 (238-333)||(52190144-52190239)
chr4 (197-311)||(31409574-31409688)
[»] chr1 (2 HSPs)
chr1 (25-333)||(35063204-35063504)
chr1 (219-295)||(49917636-49917712)
[»] chr2 (1 HSPs)
chr2 (25-185)||(4754488-4754648)
[»] chr8 (1 HSPs)
chr8 (238-333)||(17864490-17864585)
[»] chr3 (1 HSPs)
chr3 (197-309)||(19801986-19802090)
[»] chr6 (1 HSPs)
chr6 (197-295)||(9448463-9448566)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 333
Target Start/End: Complemental strand, 38921939 - 38921634
Alignment:
Q  28 cagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggcgaaacactgccacacagctggacagtttgtgtacctcc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  38921939 cagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacactgccacacagttggacagtttgtgtacctcc 38921840  T
Q  128 cccaatccaaacagatgcacctaagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatga 227  Q
    || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921839 ccgaatccaaacagctgcacctaagtgatattgttagaagtggaattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatga 38921740  T
Q  228 tcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921739 tcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggc 38921640  T
Q  328 agaaac 333  Q
    ||||||    
T  38921639 agaaac 38921634  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 35968322 - 35968504
Alignment:
Q  25 ctgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggcgaaacactgccacacagctggacagtttgtgtacc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||    
T  35968322 ctgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacaccgccacacagttggacagtttgtgtacc 35968421  T
Q  125 tcccccaatccaaacagatgcacctaagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttg 207  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35968422 tcccccaatccagacagctgcacctaagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaagtttg 35968504  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 35968510 - 35968566
Alignment:
Q  255 catgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagat 311  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  35968510 catgagttcatgagtagagttggagaagatgaaggaattcggggccttgaagaagat 35968566  T

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Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 333
Target Start/End: Complemental strand, 41740109 - 41739801
Alignment:
Q  25 ctgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggcgaaacactgccacacagctggacagtttgtgtacc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  41740109 ctgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggctaaacactgccacacagttggacagtttgtgtacc 41740010  T
Q  125 tcccccaatccaaacagatgcacctaagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaata 224  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41740009 tcccccaatccagacagctgcacctaagtgatattgttagaagtgagattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaata 41739910  T
Q  225 tgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgat 324  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41739909 tgatcacttctgggcataggtgctggtgagcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaaaaagatgat 41739810  T
Q  325 ggcagaaac 333  Q
    |||||||||    
T  41739809 ggcagaaac 41739801  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 38516954 - 38516924
Alignment:
Q  197 aatcaattttgaattttgattttgaatatga 227  Q
    |||||||||||||||||||||||||||||||    
T  38516954 aatcaattttgaattttgattttgaatatga 38516924  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 45291650 - 45291680
Alignment:
Q  197 aatcaattttgaattttgattttgaatatga 227  Q
    |||||||||||||||||||||||||||||||    
T  45291650 aatcaattttgaattttgattttgaatatga 45291680  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 45295793 - 45295878
Alignment:
Q  209 attttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgg 295  Q
    ||||||| | |||||||||| | |||| | || | |||||||||| |||||||| ||||| | |||||||||||||| |||||||||    
T  45295793 attttgaatatgaatatgataatttctagtcagatgtgttggtgaacatgagtttatgagcactgttggagaagatg-aggaattgg 45295878  T

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Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 31 - 333
Target Start/End: Complemental strand, 30830407 - 30830105
Alignment:
Q  31 ctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggcgaaacactgccacacagctggacagtttgtgtacctccccc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  30830407 ctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacactgccacacagttggacagtttgtgtacctccccc 30830308  T
Q  131 aatccaaacagatgcacctaagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatca 230  Q
    |||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30830307 aatccagacagctgcacctaagtaatattgttagaagtgagattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaatatgatca 30830208  T
Q  231 cttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcaga 330  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  30830207 cttctgggcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaaggaattgagggcattgaagaagattgaaaaagatgatggcaga 30830108  T
Q  331 aac 333  Q
    |||    
T  30830107 aac 30830105  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 52190144 - 52190239
Alignment:
Q  238 gcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaac 333  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  52190144 gcataggtattggtgagcatgagttcatgagtagtgttggagaagatgaaggaattgagggcattgaagaagattgaagaagatgaaggcagaaac 52190239  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 31409688 - 31409574
Alignment:
Q  197 aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattggg 296  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | |||||||| ||| |||||||| |||| |||||||||||||||||||||||||||     
T  31409688 aatcaattttgaattttgattttgaatatcatcatttctgggtagaggtgttgttgagcatgagtttatgaatagtgttggagaagatgaaggaattgga 31409589  T
Q  297 ggcattgaagaagat 311  Q
    |||||||||||||||    
T  31409588 ggcattgaagaagat 31409574  T

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Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 25 - 333
Target Start/End: Original strand, 35063204 - 35063504
Alignment:
Q  25 ctgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggcgaaacactgccacacagctggacagtttgtgtacc 124  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||    
T  35063204 ctgcagctacaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacacggccacacagttggacagtttgtgtacc 35063303  T
Q  125 tcccccaatccaaacagatgcacctaagtgatattgttagaagtgggattttgtaaagtttgagcatgagtgaatcaattttgaattttgattttgaata 224  Q
    ||||||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35063304 tcccccaatccaaacaactacacctaagtgatattgttagaagtgggattttataaagtttgagcatgagtgaatcaattttgaattttgattttgaata 35063403  T
Q  225 tgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgat 324  Q
    |||||| || |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35063404 tgatcatttatgggcataggtgttggtga--------gcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgaa 35063495  T
Q  325 ggcagaaac 333  Q
    |||||||||    
T  35063496 ggcagaaac 35063504  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 49917712 - 49917636
Alignment:
Q  219 tgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgg 295  Q
    |||||||||  | ||||||||| || ||||||  |  ||||||| |||||| ||||||||||||| |||||||||||    
T  49917712 tgaatatgaaaatttctgggcagagatgttggataaaatgagtttatgagttgtgttggagaagaagaaggaattgg 49917636  T

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Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 4754488 - 4754648
Alignment:
Q  25 ctgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggcgaaacactgccacacagctggacagtttgtgtacc 124  Q
    |||||||||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||| ||||    
T  4754488 ctgcagctgcaccttatgaaaaacgggcaacagaaatcagtaaacaaacacaaccaactgtaggctaaacactgccgcacagttggacagtttgtttacc 4754587  T
Q  125 tcccccaatccaaacagatgcacctaagtgatattgttagaagtgggattttgtaaagttt 185  Q
    ||||||||| || |||| ||| ||| ||||| |||||||||||||||||||||||||||||    
T  4754588 tcccccaattcagacagctgcccctgagtgaaattgttagaagtgggattttgtaaagttt 4754648  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 17864490 - 17864585
Alignment:
Q  238 gcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaac 333  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  17864490 gcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaaggaattgagaacattgaagaagattgaagaagatgaaggcagaaac 17864585  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 19802090 - 19801986
Alignment:
Q  197 aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaaggaattggg 296  Q
    ||||||||| |||||| ||||||||||||||| | |||| ||||||||||||||||| |||||||        |||| ||||||||||||||||||||||    
T  19802090 aatcaatttcgaatttagattttgaatatgataatttctaggcataggtgttggtgagcatgagt--------agtgatggagaagatgaaggaattggg 19801999  T
Q  297 ggcattgaagaag 309  Q
    |||||||||||||    
T  19801998 ggcattgaagaag 19801986  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 9448463 - 9448566
Alignment:
Q  197 aatcaattttgaattttgattt------tgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaagga 290  Q
    ||||||||||||||||||||||      |||||||||| | |||| | || | |||||||||| |||||||| ||||| | |||||||||||||| ||||    
T  9448463 aatcaattttgaattttgattttgaatatgaatatgataatttctagacaaatgtgttggtgaacatgagtttatgagcactgttggagaagatg-agga 9448561  T
Q  291 attgg 295  Q
    |||||    
T  9448562 attgg 9448566  T

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