View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_2 (Length: 558)
Name: NF7294_low_2
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 47102265 - 47101826
Alignment:
| Q |
1 |
agaaagtaaaaatacaaacagttatatcataaaaggaagaaaaactagctagttccaacgactgcgcaacaaagttaagcacaacatttatttgataggg |
100 |
Q |
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| T |
47102265 |
agaaagtaaaaatacaaacagttatatcataaaaggaagaaaaactagctagttccaacgactgcgcaacaaagttaagcacaacatttatttgataggg |
47102166 |
T |
|
| Q |
101 |
tacttgtttaggtgaaaacgtttaatagtttgttgtactggctaaactttgagttaatcttttagttcgatcgccgacagtgtacgtacacttaatcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47102165 |
tacttgtttaggtgaaaacgtttaatagtttgttgtactggctaaactttgagttaatcttttagttcgatcgccgacagtgtacgtacacttaatcagt |
47102066 |
T |
|
| Q |
201 |
cacttgcctccgtccctttatatctaactattctgttccctctgaactttgtccttccatatctctttgcagtgcacaacaacccactttgcaatcatgg |
300 |
Q |
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| T |
47102065 |
cacttgcctccatccctttatatctaactattctgttccctctgaactttgtccttccatatctctttgcagtgcacaacaacccactttgcaatcatgg |
47101966 |
T |
|
| Q |
301 |
ttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcacccacttttgtaagtttcttttctttccattcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47101965 |
ttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcacccacttttgtaagtttcttttctttccattcc |
47101866 |
T |
|
| Q |
401 |
aatctaatctagttacatatatttttcattagtcacatca |
440 |
Q |
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| T |
47101865 |
aatctaatctagttacatatatttttcattagtcacatca |
47101826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 437 - 541
Target Start/End: Complemental strand, 47101779 - 47101675
Alignment:
| Q |
437 |
atcagtttgtccaaatcaagaaaattatggttaattttgtcaaattcaaaatgatgtgcacatatataatatagtccttcaatggaccctctacggtgtg |
536 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47101779 |
atcagtttgtccaaatcaagaaaattatggttaattttgtcaaattcaaaatgatgtgcacatatataatatagtccttcaatggaccctctatggtgtg |
47101680 |
T |
|
| Q |
537 |
ctttc |
541 |
Q |
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||||| |
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| T |
47101679 |
ctttc |
47101675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 2429435 - 2429372
Alignment:
| Q |
304 |
aatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtca |
367 |
Q |
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| T |
2429435 |
aatcaaagaaattcagaggtgttaggcaacgccattggggctcttgggtctcggagattcgtca |
2429372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 44649281 - 44649210
Alignment:
| Q |
296 |
catggttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtca |
367 |
Q |
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| T |
44649281 |
catggtacattcaaagaagttcagaggtgtcaggcaacgccattggggctcttgggtctctgagattcgtca |
44649210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 49532337 - 49532400
Alignment:
| Q |
307 |
caaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcaccc |
370 |
Q |
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|||||||||||||||| |||||||| || || ||||| |||||||| ||||| ||||| ||||| |
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| T |
49532337 |
caaagaagttcagaggagtcaggcagcgccagtggggctcttgggtgtcagaaattcgccaccc |
49532400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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