View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_23 (Length: 306)
Name: NF7294_low_23
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 7063630 - 7063351
Alignment:
| Q |
15 |
tattatgggatttcagaggtgaaagaaggcattaatcaaactagtgcaaatatgcaattcctgtatgaatactctagtctgccttttgtttccacaagca |
114 |
Q |
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| T |
7063630 |
tattatgggatttcagaggtgaaagaaggcattaatcaaactagtgcaaatatgcaattcctgtatgaatactctagtctgccttttgtttccacatgca |
7063531 |
T |
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| Q |
115 |
tgaaaggataatactgggatg-----gagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaacaaaacaaagtgcgtat |
209 |
Q |
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| T |
7063530 |
tgaaaggataatactgggatgtataggagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaagaaaacaaagtgcgtat |
7063431 |
T |
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| Q |
210 |
gaatagaggtgaatggaggctatggagctgtggagtaaaaattgtgtagacctgtcaagaatgagcagtggtgacattag |
289 |
Q |
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| T |
7063430 |
gaatagaggtgaatggaggctatggagctgtggagtaaaaattgtgtagacctgtcaagaatgagcagtagtgacattag |
7063351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 289
Target Start/End: Complemental strand, 7014386 - 7014120
Alignment:
| Q |
28 |
cagaggtgaaagaaggcattaatcaaactagtgcaaatatgcaattcctgtatgaatactctagtctgccttttgtttccacaagcatgaaaggataata |
127 |
Q |
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| T |
7014386 |
cagaggtgaaagaaggcattattcaaactagtgcaaatctgcaattcctgtatgaatactccagtctgcattttgtttccacatgcatgaaaggataata |
7014287 |
T |
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| Q |
128 |
ctgggatg-----gagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaacaaaacaaagtgcgtatgaatagaggtgaa |
222 |
Q |
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| T |
7014286 |
ctggggtgtgtaggagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaagaaaacaaagtgcgtatgaatagaggtgaa |
7014187 |
T |
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| Q |
223 |
tggaggctatggagctgtggagtaaaaattgtgtagacctgtcaagaatgagcagtggtgacattag |
289 |
Q |
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| T |
7014186 |
tgtaggttatggagctgtggagcggaaattgtgtagacctgtcaagaacgagcagtagtgacattag |
7014120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 289
Target Start/End: Complemental strand, 7029744 - 7029478
Alignment:
| Q |
28 |
cagaggtgaaagaaggcattaatcaaactagtgcaaatatgcaattcctgtatgaatactctagtctgccttttgtttccacaagcatgaaaggataata |
127 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
7029744 |
cagaggtgaaagaaggcattattcaaactagtgcaaatctgcaattcctgtatgaatactccagtctgcattttgtttccacatgcatgaaaggataata |
7029645 |
T |
|
| Q |
128 |
ctgggatg-----gagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaacaaaacaaagtgcgtatgaatagaggtgaa |
222 |
Q |
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| T |
7029644 |
ctggggtgtgtaggagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaagaaaacaaagtgcgtatgaatagaggtgaa |
7029545 |
T |
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| Q |
223 |
tggaggctatggagctgtggagtaaaaattgtgtagacctgtcaagaatgagcagtggtgacattag |
289 |
Q |
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| T |
7029544 |
tgtaggttatggagctgtggagcggaaattgtgtagacctgtcaagaacgagcagtagtgacattag |
7029478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 289
Target Start/End: Complemental strand, 7059153 - 7058887
Alignment:
| Q |
28 |
cagaggtgaaagaaggcattaatcaaactagtgcaaatatgcaattcctgtatgaatactctagtctgccttttgtttccacaagcatgaaaggataata |
127 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
7059153 |
cagaggtgaaagaaggcattattcaaactagtgcaaatctgcaattcctgtatgaatactccagtctgcattttgtttccacatgcatgaaaggataata |
7059054 |
T |
|
| Q |
128 |
ctgggatg-----gagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaacaaaacaaagtgcgtatgaatagaggtgaa |
222 |
Q |
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| T |
7059053 |
ctggggtgtgtaggagttgaggtgtagatcagaagcacatatgtaaggactgtttggacaagtaaataaagaaaacaaagtgcgtatgaatagaggtgaa |
7058954 |
T |
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| Q |
223 |
tggaggctatggagctgtggagtaaaaattgtgtagacctgtcaagaatgagcagtggtgacattag |
289 |
Q |
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| T |
7058953 |
tgtaggttatggagctgtggagcggaaattgtgtagacctgtcaagaacgagcagtagtgacattag |
7058887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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