View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_25 (Length: 281)
Name: NF7294_low_25
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 45690281 - 45690489
Alignment:
| Q |
29 |
atctatctatctatctacattttatttatttattgaataaaatctatacataatcatctgcctaataactaggcacacacttgcggtgtgcgtgcactct |
128 |
Q |
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| T |
45690281 |
atctatctatctgtctacatttta----tttattgaataaaatctatacataatcatctgcctaataactaggcacacacttgcggtgtgcgtgcactct |
45690376 |
T |
|
| Q |
129 |
caactatcatcctcctttatactttcattttgtttcccttaccatttaatagtattac--nnnnnnnncaacattaatatttagacaccgtttatttttc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
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| T |
45690377 |
caactatcatcctcctttatactttcattttgtttcccttaccatttaattgtattacttttttttttcaacattaatatttagacaccatttatttttc |
45690476 |
T |
|
| Q |
227 |
tacactcattaaa |
239 |
Q |
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||||||||||||| |
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| T |
45690477 |
tacactcattaaa |
45690489 |
T |
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