View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_27 (Length: 261)
Name: NF7294_low_27
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 42206637 - 42206409
Alignment:
| Q |
25 |
ctagaggcgaccgtatttgttagaattgcaatcaatccgcaaactgacaattcgtatcaacaaacatacaattgctaagggctttctgtacatgaatcag |
124 |
Q |
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| T |
42206637 |
ctagaggcgaccgtatttgttagaattgcaatcaatccgcaaactgagaattcgtatcaacaaacatacaattgctaagggctgtctgtacatgaatcag |
42206538 |
T |
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| Q |
125 |
tataattctatttctgtatcacaccaatactaactacatgatt---------atttatttgcattcactatgtttgtttgatttgttaccttgtttccat |
215 |
Q |
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| T |
42206537 |
tataa------ttctgtatcacaccaatactaactacatgattcagtgattattttatttgcattcactatgtttgtttgatttgttaccttgtttccat |
42206444 |
T |
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| Q |
216 |
tctttcaaaacaaacactttacacagtcatttcat |
250 |
Q |
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| T |
42206443 |
tctttcaaaacaaacactttacacagtcatttcat |
42206409 |
T |
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