View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7294_low_3 (Length: 554)
Name: NF7294_low_3
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 167 - 533
Target Start/End: Original strand, 29506397 - 29506763
Alignment:
| Q |
167 |
tatacttaattaaaagaccaacaactaacagatcaaagatccatgatccatcacaattcacaagtgtttgaaactactttcttacaaaaagcacaaagtt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29506397 |
tatacttaattaaaagaccaacaactaacagatcaaagatccatgatccatcacaattcacaagtgtttgaaactactttcttacaaaaagcacaaagtt |
29506496 |
T |
|
| Q |
267 |
tggcacatcaaaatgcctttttattacataattataacatcagaaaggttaagataactgaaattatttagtactacatgttttgattcgtgttgagaat |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29506497 |
tggcacatcaaaatgcctttttattacataattataacatcagaaaggttaagataactgaaattatttagtactacatgttttgattcgtgttgagaat |
29506596 |
T |
|
| Q |
367 |
aacaaacatcacaataaaccaccacgattttaacaaaagctacactttcgagcttcaacaaaatcaacgcatcattgtgttttcgccaaactcatcactc |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29506597 |
aacaaacatcacaataaaccaccacgattttaacaaaagctacactttcgagcttcaacaaaatcaacgcatcattgtgttttcgccaaactcatcactc |
29506696 |
T |
|
| Q |
467 |
atccaaacataaacttaacctaacatctccaacctactcaaggccagacttcttcttgatctgcaca |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29506697 |
atccaaacataaacttaacctaacatctccaacctactcaaggccagccttcttcttgatctgcaca |
29506763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 211 - 533
Target Start/End: Original strand, 29509640 - 29509961
Alignment:
| Q |
211 |
gatccatcacaattcacaagtgtttgaaactactttcttacaaaaagcacaaagtttggcacatcaaaatgcctttttattacataattataacatcaga |
310 |
Q |
| |
|
||||||| ||||||||||||| || | | || |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
29509640 |
gatccattacaattcacaagtacttcagaataatttcctacaaaaaccacaaagtttggcacatcaaagtgcctttttattacataattattccaacaga |
29509739 |
T |
|
| Q |
311 |
aaggttaagataactgaaattatttagtactacatgttttgattcgtgttgagaataacaaacatcacaataaaccaccacgattttaacaaaagctaca |
410 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||||||||||| || |||||||||||| | | |||| ||||||| ||||||||||||||||||| |
|
|
| T |
29509740 |
aaggttgagaaaactgaaatcatttagtactacatgttttgattcatggtgagaataacaat-accgcaatgaaccaccgtgattttaacaaaagctaca |
29509838 |
T |
|
| Q |
411 |
ctttcgagcttcaacaaaatcaacgcatcattgtgttttcgccaaactcatcactcatccaaacataaacttaacctaacatctccaacctactcaaggc |
510 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29509839 |
ctttcgagcttcaacaaaatcaaggcatcatcatggtttcgccaaactcaccacacatctaaacataaacttaacctaacatctccaacctactcaaggc |
29509938 |
T |
|
| Q |
511 |
cagacttcttcttgatctgcaca |
533 |
Q |
| |
|
|| |||||||| |||||| |||| |
|
|
| T |
29509939 |
caaacttcttcctgatctccaca |
29509961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 6774765 - 6774725
Alignment:
| Q |
392 |
gattttaacaaaagctacactttcgagcttcaacaaaatca |
432 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
6774765 |
gattttagcaaaagctacacttcggagcttcaacaaaatca |
6774725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 14408736 - 14408776
Alignment:
| Q |
392 |
gattttaacaaaagctacactttcgagcttcaacaaaatca |
432 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
14408736 |
gattttagaaaaagctacactttggagcttcaacaaaatca |
14408776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 30624073 - 30624017
Alignment:
| Q |
374 |
atcacaataaaccaccacgattttaacaaaagctacactttcgagcttcaacaaaat |
430 |
Q |
| |
|
|||||| | ||||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
30624073 |
atcacattgaaccaccacgattttggcaaaagttgcactttcgagcttcaacaaaat |
30624017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 5413991 - 5413942
Alignment:
| Q |
392 |
gattttaacaaaagctacactttcgagcttcaacaaaatcaacgcatcat |
441 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| ||| | |||||| |
|
|
| T |
5413991 |
gattttgacaaaagctacactttggagcttcaacaaactcaccacatcat |
5413942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 30007537 - 30007497
Alignment:
| Q |
392 |
gattttaacaaaagctacactttcgagcttcaacaaaatca |
432 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
30007537 |
gattttgacaaaagttacactttcgagcttcaacaaaatca |
30007497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 462
Target Start/End: Original strand, 6369360 - 6369422
Alignment:
| Q |
400 |
caaaagctacactttcgagcttcaacaaaatcaacgcatcattgtgttttcgccaaactcatc |
462 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
6369360 |
caaaagctacactttagagcttcaacaaaatcgtagtgtcattgtgatttcgtcaaactcatc |
6369422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University