View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_34 (Length: 243)
Name: NF7294_low_34
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 4702852 - 4702789
Alignment:
| Q |
154 |
aaaactggtaaaaatcaatcagttctagcatatttgcaatatttgagagcagatcataaggcata |
218 |
Q |
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| T |
4702852 |
aaaactggtaaaa-tcaatcagttccagcctatttgcaatatttgagagcagatcataaggcata |
4702789 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 4706222 - 4706161
Alignment:
| Q |
151 |
atgaaaactggtaaaaatcaatcagttctagcatatttgcaatatttgagagcagatcataag |
213 |
Q |
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| T |
4706222 |
atgaaaacaggtaaaa-tcaatcagttccagcctatttgcaatatttgacagcagatcataag |
4706161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 4706558 - 4706506
Alignment:
| Q |
74 |
aacaatgcaatcctgagatgtaggagcagatgaaaatgctgcaatacagtcat |
126 |
Q |
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| T |
4706558 |
aacaatacaatcctgagatgtgggagcagatgaaattgctgcaatatagtcat |
4706506 |
T |
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