View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_37 (Length: 237)
Name: NF7294_low_37
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 39049819 - 39050022
Alignment:
| Q |
15 |
aagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatgataataccttatgggttggatcagtggcag |
114 |
Q |
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| T |
39049819 |
aagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatgataataccttatgggttggatcagtggcag |
39049918 |
T |
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| Q |
115 |
ctccagatgatgcacctatgcatagttttattatgaatttacgtggttatgtcattgagttcaacaaatatttagctcaagatttaaggattgaaatttg |
214 |
Q |
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| T |
39049919 |
ctccagatgatgcacctatgcatagttttattatgaatttacgtggttatgtgattgagttcaacaagtatttagctcaagatttaaggattgaaatttg |
39050018 |
T |
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| Q |
215 |
tcag |
218 |
Q |
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|||| |
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| T |
39050019 |
tcag |
39050022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 39238175 - 39238378
Alignment:
| Q |
15 |
aagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatgataataccttatgggttggatcagtggcag |
114 |
Q |
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|||||||||||| |||||||||| |||| || |||||||||| || ||||| ||||| || || || ||||| ||||||||| |||||||||||||| |
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| T |
39238175 |
aagaataactacttaaactatcacgtgaggatgattgatcttgttaaggttgggggattaatcggttacgataacaccttatggagtggatcagtggcag |
39238274 |
T |
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| Q |
115 |
ctccagatgatgcacctatgcatag-ttttattatgaatttacgtggttatgtcattgagttcaacaaatatttagctcaagatttaaggattgaaattt |
213 |
Q |
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| T |
39238275 |
ctccacctgatgcacctatg-atggatttcattaggaatttacgtggttatgtgattgagttcaataaacatctagctcaagattcaagaattgagattt |
39238373 |
T |
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| Q |
214 |
gtcag |
218 |
Q |
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||||| |
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| T |
39238374 |
gtcag |
39238378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 39055901 - 39056100
Alignment:
| Q |
19 |
ataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatgataataccttatgggttggatcagtggcagctcc |
118 |
Q |
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|||| ||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| || | ||| |
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| T |
39055901 |
ataattacttaaactatcatgagaggataattgatcttgttaaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttcc |
39056000 |
T |
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| Q |
119 |
agatgatgcacctatgcatagttttattatgaatttacgtggttatgtcattgagttcaacaaatatttagctcaagatttaaggattgaaatttgtcag |
218 |
Q |
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||||||||| ||||||| ||| ||| |||||||||| |||| |||||| | ||||||||||||||| |||||| |||| | || ||||||||| |
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| T |
39056001 |
agatgatgctcctatgctggatttcgttaaacgtttacgtggtcatgtgattgagcttaacaaatatttagctaaagattcaagggtcgagatttgtcag |
39056100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 39291231 - 39291044
Alignment:
| Q |
19 |
ataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatgataataccttatgggttggatcagtggcagctcc |
118 |
Q |
| |
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|||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||||| ||| |||||| || ||||||||| ||| || || || | ||| |
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| T |
39291231 |
ataactacattaactatcacaagagggtggttgagcttgttaaagttggaggattggttgcatatgacaacaccttatggagtggttctgttgcggttcc |
39291132 |
T |
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| Q |
119 |
agatgatgcacctatgcatagttttattatgaatttacgtggttatgtcattgagttcaacaaatatttagctcaagatttaaggatt |
206 |
Q |
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| |||||||| ||| |||| ||| |||||| |||||| |||| |||||||| |||||| ||||||| || |||||||||||| |
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| T |
39291131 |
atcagatgcaccgatgacaagttacgttaggaattttcgtggtcatgtgattgagtttaacaaacatttagcccaggatttaaggatt |
39291044 |
T |
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