View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_4 (Length: 543)
Name: NF7294_low_4
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 38419238 - 38419565
Alignment:
| Q |
22 |
ttttcaacacaatctctaaaaactagtgaaagagagaaaattgattaagagggaaaagatgttattggaagttttgtatttattataatttgcaatagaa |
121 |
Q |
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| T |
38419238 |
ttttcaacacaatctctaaaaactagtgaaagagagaaaattgattaagagg-aaaagatgttattggaagttttgtatttat---aatttgcaatacaa |
38419333 |
T |
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| Q |
122 |
tgcatctcttatatacacaatgcaaaacttaacaaacttcctaagaaatttcaacaaaattaaccaaagaaaacagataacttgtgatgcaagtaatcat |
221 |
Q |
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| T |
38419334 |
tgcatctcttatatacacaatgcaaaacttaacaaacttcctaagaaatttcaacaaaattaaccaaagaaaacagataacttgtgatgcaagtaatcat |
38419433 |
T |
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| Q |
222 |
caactaagatgaattattttgaaattaattaggtttttgagacaaagtacgccattgtctctcaaatactcagatacggtgaagtatgcctgatgcaagg |
321 |
Q |
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| T |
38419434 |
caactaagatgaattattttgaaattaattaggtttttgagacaaagtacgccattgtctctcaaatactcagatacggtgaagtatgcctgatgcaagg |
38419533 |
T |
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| Q |
322 |
cgatcaagtgccttgtctcaaatactcagata |
353 |
Q |
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| T |
38419534 |
cgatcaagtgccttgtctcaaatactcagata |
38419565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 38420161 - 38420267
Alignment:
| Q |
350 |
gatatggtttgtctgccaaggaggatgatgaaacaatagtagattagcaaattatattttcatataggagaccgaaacaccaaaaagttacatgtcatat |
449 |
Q |
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| T |
38420161 |
gatatggtttgtctgccaaggaggatgatgaaacaatagtagattagcaaattatattttcatataggagaccaaaacaccaaaaagttacatgtcatat |
38420260 |
T |
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| Q |
450 |
gttattc |
456 |
Q |
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| T |
38420261 |
gttattc |
38420267 |
T |
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