View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_6 (Length: 427)
Name: NF7294_low_6
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 178 - 409
Target Start/End: Original strand, 9101641 - 9101870
Alignment:
| Q |
178 |
agattccttaaacaataccctcaaaatacttgttagcgagaccttttaaattgaagtaaaaataacagtgacaagaaagagggttataattgtgactatt |
277 |
Q |
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| T |
9101641 |
agattccttaagcaataccctcaaaatatttgttagcgagacctttcaaattgaagtaaaaataacagtgacaa--aagagggttataattgtgactatt |
9101738 |
T |
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| Q |
278 |
taaaaattggatcttgcactttgtaaaaatcttttctcaatttaaaacaatacacttaagtgtatgtgtagtttgatttgcatgtaccgagagtaaagag |
377 |
Q |
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| T |
9101739 |
taaaaattggatctttcactttgtaaaaaaaatttctcaatttaaaacaatacacttaactgtatgtgtagtttgatttgcatgtaccgagagtaaagag |
9101838 |
T |
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| Q |
378 |
tatagttgcagagttaacacacaagaactatc |
409 |
Q |
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| T |
9101839 |
tatagttgcagagttaacacacaagaactatc |
9101870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 9101484 - 9101591
Alignment:
| Q |
19 |
actaggtgagattgatggaactcatgcgtcgttttcatgttaaaaagtatctttagggtatcatttaagcatccaagaatagtagtttttacgttgaaaa |
118 |
Q |
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| T |
9101484 |
actaggtgagattgatggaacccatgcgtcgttttcatgttaaaaagtatctttagggtatcatttaagcatccaaaagtagtagtttttatattggaaa |
9101583 |
T |
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| Q |
119 |
ttatgtag |
126 |
Q |
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| T |
9101584 |
ttatgtag |
9101591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 225 - 359
Target Start/End: Original strand, 9082623 - 9082756
Alignment:
| Q |
225 |
aaattgaagtaaaaataacagtgacaagaaagagggttataattgtgactatttaaaaattggatcttgcactttgtaaaaatcttttctcaatttaaaa |
324 |
Q |
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| T |
9082623 |
aaattaaagcaaaaataacagtcacaggaaagagggttacaattgtcactctttaaaaattggatcttgcactttgttaaaat-atttctcaatataaaa |
9082721 |
T |
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| Q |
325 |
caatacacttaagtgtatgtgtagtttgatttgca |
359 |
Q |
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| T |
9082722 |
caatacgcttaggtgtatgtgtagtttgatttgca |
9082756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 370
Target Start/End: Complemental strand, 9111184 - 9111046
Alignment:
| Q |
231 |
aagtaaaaataacagtgacaagaaagagggttataattgtgactatttaaaaattggatcttgcactttgtaaaaatcttttctcaatttaaaacaatac |
330 |
Q |
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| T |
9111184 |
aagtgaaaataacggtcacatgaaagagggttataattgtgtcccttcaaaaattggatcttgcactttgtaaaaaaaaaat-tcaatttaaaacgatac |
9111086 |
T |
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| Q |
331 |
acttaagtgtatgtgtagtttgatttgcatgtaccgagag |
370 |
Q |
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| T |
9111085 |
atttaactgtatgtgtagtttgatttgcatgtaccgagag |
9111046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 13530522 - 13530592
Alignment:
| Q |
55 |
atgttaaaaagtatctttagggtatcatttaagcatccaagaatagtagtttttacgttgaaaattatgta |
125 |
Q |
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| T |
13530522 |
atgttaacaagtgtccttaaggtattgtttaagcatccaaaattagtagtttttactttgaaaattgtgta |
13530592 |
T |
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