View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7294_low_7 (Length: 422)
Name: NF7294_low_7
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7294_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 24453351 - 24452955
Alignment:
| Q |
18 |
aacttgcacttatcaataagatatgcatctaagacaagcagactcctcctggagaattgttgattaacagctcactctcagtccaaaacccgagttgcag |
117 |
Q |
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| T |
24453351 |
aacttgcacttatcaataagatatgcatctaagacaagcagactcctcctggagaattgttgattaacagctcactctcagtccaaaacccgagttgcag |
24453252 |
T |
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| Q |
118 |
ttcattcaaaagaaattccgtggaagttggtccctcctaaaccttctgctagctagctatgccgtggaaggtgaggtgttatgaaccatgacagtgtgat |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24453251 |
ttcattcaaaagaaattccgcggaagttggtccctcctaaaccttctgctagctagctatgccgtggaaggtgaggtgttatgaaccatgacagtttgat |
24453152 |
T |
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| Q |
218 |
cttctttggatggaggccagtagcgaaacatcgatctaccaacaatgttcttgatcgggagcggaccccagttatgagaatcaaaactctggttacgatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24453151 |
cttctttggatggaggccagtagcgaaacatcgatctaccaacaatgttcttgatcgggagtggaccccagttatgagaatcaaaactctggttacgatt |
24453052 |
T |
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| Q |
318 |
gtctcccattacaaacacatgtcctgctggaacaaccattggagccaactcgtaatcaagaggctctaaaacaaattcctcttgttcagcaacacca |
414 |
Q |
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| T |
24453051 |
gtctcccattacaaacacatgtcctgctggaacaaccattggagccaactcgtaatcaagaggctctaaaacaaattcctcttgttcagcaacacca |
24452955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 46460786 - 46460724
Alignment:
| Q |
352 |
accattggagccaactcgtaatcaagaggctctaaaacaaattcctcttgttcagcaacacca |
414 |
Q |
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| T |
46460786 |
accattggagccaactcgtaagcaagaggctctaaaacaaattcctcatcttcagcaacacca |
46460724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 46461278 - 46461178
Alignment:
| Q |
186 |
aggtgaggtgttatgaaccatgacagtgtgatcttctttggatggaggccagtagcgaaacatcgatctaccaacaatgttcttgatcgggagcggaccc |
285 |
Q |
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|||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||| || |||||||||||||||| ||| || ||||||||| |
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| T |
46461278 |
aggtgaggatttatgaaccatgacggtgtcggatactttggatggaggccagtagcgaaacatggacctaccaacaatgttctcgattggaagcggaccc |
46461179 |
T |
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| Q |
286 |
c |
286 |
Q |
| |
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| T |
46461178 |
c |
46461178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 46460951 - 46460882
Alignment:
| Q |
285 |
ccagttatgagaatcaaaactctggttacgattgtctcccattacaaacacatgtcctgctggaacaacc |
354 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||| |||||||||| |
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| T |
46460951 |
ccagttatgagaatcaaaactcttgttacggttgtctcccatcacaaagacatgtccttttggaacaacc |
46460882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 46461424 - 46461382
Alignment:
| Q |
64 |
tcctggagaattgttgattaacagctcactctcagtccaaaac |
106 |
Q |
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| T |
46461424 |
tcctggagaattgttgaataacagctcactcctagtccaaaac |
46461382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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