View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7294_low_8 (Length: 411)

Name: NF7294_low_8
Description: NF7294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7294_low_8
NF7294_low_8
[»] chr1 (3 HSPs)
chr1 (131-273)||(52219589-52219731)
chr1 (13-100)||(52219745-52219832)
chr1 (349-393)||(52219474-52219518)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 52219731 - 52219589
Alignment:
Q  131 cagggtttcgtattgaattcacgaggaatgaagctatttgcaacaagttggattcctgcaaacgaaaatccaaaagcattaatattcatgtgtcatggat 230  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52219731 cagggtttcgtattgaattcacgaggaatgaagctattggcaacaagttggattcctgcaaacgaaaatccaaaagcattaatattcatgtgtcatggat 52219632  T
Q  231 atgccatggaatgcagcatcaccatggacagtaagtaattaaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52219631 atgccatggaatgcagcatcaccatggacagtaagtaattaaa 52219589  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 52219832 - 52219745
Alignment:
Q  13 gtatgattaacacttacaccaacatctttttgtagaaaatgttacatgtttattataggactttatcttaatcaaaagaaacgttctg 100  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52219832 gtatgattaacacttacaccaacatctttttgtataaaattttacatgtttattataggactttatcttaatcaaaagaaacgttctg 52219745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 52219518 - 52219474
Alignment:
Q  349 ggcactgcaagaagacttgcaaatggtggatatgcagtatatggt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52219518 ggcactgcaagaagacttgcaaatggtggatatgcagtatatggt 52219474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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