View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7296_high_3 (Length: 385)
Name: NF7296_high_3
Description: NF7296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7296_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 27974978 - 27974625
Alignment:
| Q |
18 |
caaactagctatctctttatcaatatttttctgttcttcactaattatgctcttacatgtgtcggcatgttcttgttcttcttgacccgtgaatttagtg |
117 |
Q |
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| T |
27974978 |
caaactagctatctctttatcaatatttttctgttcttcactaattatgctcttacatgtgtcggcatgttcttgttcttcttgacccgtgaatttagtg |
27974879 |
T |
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| Q |
118 |
atgaattgatctctaagattctcaaacatctcatgagcttttttaactctttcatattcaactttagcttctactgatgattgtgcttgaatcttttgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27974878 |
atgaattgatctctaagattctcaaacatctcatgagcttttttaactctttcatattcaactttagcttctactgatgactgtgcttgaatcttttgca |
27974779 |
T |
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| Q |
218 |
actttgaaagcgtctcttgacacgatttcagtgccgttgctgccattaaagctctagcatcgtcgtcttcaatgacagtaccgacaccaaattcatcttg |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27974778 |
actttgaaagcgtctcttgacatgatttcagtgccgttgctgccattaaagctctagcatcgtcgtcttcaatgacagtaccgacgccaaattcatcttg |
27974679 |
T |
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| Q |
318 |
caaactgcaaacatgtttctgcatacctgttatctgatcttcgatttcccaata |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27974678 |
caaactgcaaacatgtttctgcatacctgttatctgatcttcgatttcccaata |
27974625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 46041629 - 46041708
Alignment:
| Q |
250 |
gccgttgctgccattaaagctctagcatcgtcgtcttcaatgacagtaccgacaccaaattcatcttgcaaactgcaaac |
329 |
Q |
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||||| |||||||||||||||| || |||| |||||||| || |||| || || ||| |||||||||||||||||||| |
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| T |
46041629 |
gccgtggctgccattaaagctcgtgcgtcgttatcttcaattactgtactgatactaaactcatcttgcaaactgcaaac |
46041708 |
T |
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