View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7296_high_5 (Length: 376)
Name: NF7296_high_5
Description: NF7296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7296_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 8893291 - 8893632
Alignment:
| Q |
16 |
atacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaatnnnnnnnnnnnnnnnnnnnnnctaac |
115 |
Q |
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| T |
8893291 |
atacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaa---gaaaaaaaaagaaaaaaaactaac |
8893387 |
T |
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| Q |
116 |
aca--ttaatatactttattacacgcaaatgaagctataatttaaactgctttttgttctccacaagttttcttaaaaacccgattccatttggaaatat |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8893388 |
acacattaatatactttattacacgcaaatgaagctataatttaaactgctttttgttccccacaagttttcttaaaaacccgattccatttggaaatat |
8893487 |
T |
|
| Q |
214 |
tgttctgcatggaaaaacacggttttgtctaactcactcattcgaggtggaaagaccatgtttttccttatatatttaaaacggtacttccaaacgggtc |
313 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8893488 |
tgttctgcacggaaaaacacagttttgtctaactcactcattcgaggtggaaagaccatgtttttccctatatatttaaaacggtacttccaaacgggtc |
8893587 |
T |
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| Q |
314 |
ggttttttaagaaaacacgaggatgaaaatagctctcatagcttc |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8893588 |
ggttttttaagaaaacacgaggatgaaaatagctctcatagcttc |
8893632 |
T |
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