View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7296_high_7 (Length: 243)

Name: NF7296_high_7
Description: NF7296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7296_high_7
NF7296_high_7
[»] chr8 (2 HSPs)
chr8 (13-225)||(10600865-10601077)
chr8 (20-225)||(20526336-20526541)
[»] chr1 (4 HSPs)
chr1 (13-225)||(47747335-47747547)
chr1 (13-224)||(47726030-47726241)
chr1 (103-225)||(6949713-6949835)
chr1 (13-63)||(16678901-16678952)
[»] scaffold1964 (1 HSPs)
scaffold1964 (13-225)||(884-1095)
[»] chr2 (4 HSPs)
chr2 (24-225)||(2973587-2973784)
chr2 (13-221)||(14230798-14231006)
chr2 (13-225)||(10973705-10973917)
chr2 (29-221)||(17826518-17826714)
[»] chr4 (6 HSPs)
chr4 (19-221)||(12354999-12355201)
chr4 (13-221)||(27066891-27067099)
chr4 (13-221)||(27087604-27087812)
chr4 (18-173)||(54027864-54028019)
chr4 (13-89)||(27066503-27066579)
chr4 (13-89)||(27066697-27066773)
[»] chr6 (1 HSPs)
chr6 (13-221)||(30141095-30141303)
[»] chr5 (3 HSPs)
chr5 (18-204)||(5335371-5335557)
chr5 (19-221)||(29755116-29755318)
chr5 (54-225)||(26683244-26683415)
[»] chr3 (2 HSPs)
chr3 (22-225)||(12370951-12371154)
chr3 (24-136)||(21263330-21263442)
[»] scaffold0643 (1 HSPs)
scaffold0643 (13-173)||(870-1031)
[»] chr7 (1 HSPs)
chr7 (97-138)||(27810333-27810374)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 10601077 - 10600865
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||||||||||    
T  10601077 agcaaagaccggaaagtcgtgatgatgttgccaaattcagttatgtcttcccgacctgagcaaagagtgtcttttgtggttttggagtcaacttcaaaat 10600978  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10600977 caatattatctaagtgcatatcactcgcccattgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 10600878  T
Q  213 tctagccaaaaca 225  Q
    |||||||||||||    
T  10600877 tctagccaaaaca 10600865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 20526336 - 20526541
Alignment:
Q  20 accgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatatt 119  Q
    ||||||||||  |||| ||||| || | |||||||||||||||||||||| |||||| ||||||||||||| |||| ||||  ||||||||||| |||||    
T  20526336 accgggaagcaatgataatgttaccgacttcagttatgtcttcccgacccgagtaaatagcatcttttgtgattttagagtagacttcaaaatccatatt 20526435  T
Q  120 atctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgttctagcc 219  Q
    ||| | |||||||||| || ||| ||| || ||| ||| ||| || || ||||| || || ||||||||||| |||||| ||||  ||| ||||||||||    
T  20526436 atcaaggtgcatatcattcacccattggagagcaaggtgaagacccaatgcttccccaatatcaaccggatacacaccattaaaattgaatgttctagcc 20526535  T
Q  220 aaaaca 225  Q
    ||||||    
T  20526536 aaaaca 20526541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 47747547 - 47747335
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||    
T  47747547 agcaaagaccgggaatatgtgatgatgttgccaaattcagttatgtcttcccgactcgagtaaagagcgtcttttgtggttttggagtcgacttcaaaat 47747448  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  47747447 caaaattatctaagtgcatatcactcgcccattgaatcgcatggtaaaggcctaaagcttcacctatgtcaatcgggtatacaccaacaaaggtgactgt 47747348  T
Q  213 tctagccaaaaca 225  Q
    |||||||||||||    
T  47747347 tctagccaaaaca 47747335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 47726241 - 47726030
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||    
T  47726241 agcaaagaccgggaatatgtgatgatgttgccaaattcagttatgtcttcccgactcgagtaaagagcgtcttttgtggttttggagtcgacttcaaaat 47726142  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  47726141 caaaattatctaagtgcatatcactcgcccattgaatcgcatggtaaaggcctaaagcttcacctatgtcaatcgggtatacaccaacaaaggtgactgt 47726042  T
Q  213 tctagccaaaac 224  Q
    ||||||||||||    
T  47726041 tctagccaaaac 47726030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 6949835 - 6949713
Alignment:
Q  103 acttcaaaatcaatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataa 202  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  6949835 acttcaaaatcaatattatctaagtgcatatcactcgcccattgaagcgcatggtaaaggcctaaaacttcacctttgtcaacaggatatacaccaataa 6949736  T
Q  203 aggtgactgttctagccaaaaca 225  Q
    |||||| ||||||||||||||||    
T  6949735 aggtgattgttctagccaaaaca 6949713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 16678901 - 16678952
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcag-ttatgtcttcc 63  Q
    |||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  16678901 agcaaagaccgggaagccgtgatgatgttgccaaattcagtttatgtcttcc 16678952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 1095 - 884
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| |||| || |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  1095 agcaaagactggaaagccgtgataatgttgccaaattcagttatgtcttcccgacccgagtaaagagcgtcttttgtggttttggagtcgacttcaaaat 996  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  995 caatattatctaagtgcatatcactcgccgattgaagcgcatggtaaaggcttaaagcttcacctatgtcaaccggatatacatcaat-aaggtgactgt 897  T
Q  213 tctagccaaaaca 225  Q
    |||||||||||||    
T  896 tctagccaaaaca 884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 2973587 - 2973784
Alignment:
Q  24 ggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatattatct 123  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2973587 ggaagccgtgatgatgttgccaaattcagttatgtcttcccgacccgagtaaagagcatcttttgtggttttggagtcgacttcaaaatcaatattatct 2973686  T
Q  124 aagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgttctagccaaaa 223  Q
    |||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  2973687 aagtccatatcactcg-ccattgaagcgcatggtaaatgcctaaagcttcacctatgtcaaccggatatacacc---aaaggtgactgttctagccaaaa 2973782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 14231006 - 14230798
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||| | |||||| |||||||||||||||| ||||| ||||||| ||    
T  14231006 agcaaagaccgggaggctgtgatgatgtttccaaattcggttatgtcttcccgacccgaataaagaccatcttttgtggttttagagtcgacttcaatat 14230907  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    ||||  || | | ||||||||| |||| || ||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||| | | |||    
T  14230906 caatgataacaaggtgcatatcgctcgtccattgaagcgcatggtaaaggcccaaagcttccccaatgtcaaccggatagacaccaataaagctaattgt 14230807  T
Q  213 tctagccaa 221  Q
    |||||||||    
T  14230806 tctagccaa 14230798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 10973705 - 10973917
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| |||||||||||| ||||||||||| |||||||| |||||||||||| ||||| | || |||||||||||| ||||||| ||||| ||||||||||    
T  10973705 agcaaagaccgggaagccgtgatgatgttaccaaattctgttatgtcttcctgacccgaatatagagcatcttttatggttttagagtcgacttcaaaat 10973804  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    |||||||||| | |||||||||||| |||| |||||||||||||||||| || ||||||||  | ||||||| |||||| |||||||||||  | | |||    
T  10973805 caatattatcaaggtgcatatcactagcccattgaagcgcatggtaaagacccaaagcttcctcaatgtcaatcggataaacaccaataaaacttattgt 10973904  T
Q  213 tctagccaaaaca 225  Q
    ||| |||||||||    
T  10973905 tctggccaaaaca 10973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 17826714 - 17826518
Alignment:
Q  29 ctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatattatctaagtg 128  Q
    ||||||||||||| |||||||| ||||| |||||||||| | | |||||||||||||||||| |||| ||||| |||||||||||||||||||| | |||    
T  17826714 ctgtgatgatgttaccaaattcggttatatcttcccgacacgaataaagagcatcttttgtgattttagagtcgacttcaaaatcaatattatcaaggtg 17826615  T
Q  129 catatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacacc----aataaaggtgactgttctagccaa 221  Q
    |||||| || | || ||||||||||||||||||||  |||||||| || |||||||||||||| |||||    ||||||| | ||||||||||||||    
T  17826614 catatcgcttgtccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaaccggatagacaccaagaaataaagctaactgttctagccaa 17826518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 12355201 - 12354999
Alignment:
Q  19 gaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatat 118  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||||| | |||||| |||||||||||||||| ||||| |||||||||||||| |    
T  12355201 gaccgggaagctgtgatgatatttccaaattccgttatgtcttcccgacccgaataaagaccatcttttgtggttttagagtcgacttcaaaatcaatgt 12355102  T
Q  119 tatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgttctagc 218  Q
    |||| | ||||||||| ||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||| |||||||||||| | | |||||||||    
T  12355101 tatcaaggtgcatatcgctcgcccattgaatcgcatggtaaaggcccaaagcttccccaatgtcaaccggatagacaccaataaagctaattgttctagc 12355002  T
Q  219 caa 221  Q
    |||    
T  12355001 caa 12354999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 27066891 - 27067099
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| ||||||| ||| |||||||||||| ||||||||  ||||||||||||||||| | |||| | | |||| ||||||||| ||||| ||||||||||    
T  27066891 agcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaataaataccgtcttctgtggttttagagtcgacttcaaaat 27066990  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    |||| ||||| | ||||||||  ||||||| ||||||||||||||||||||  |||||||| || |||||||| ||||| |||||||||||| | | |||    
T  27066991 caatgttatcaaggtgcatattgctcgcccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaactggatagacaccaataaagctaattgt 27067090  T
Q  213 tctagccaa 221  Q
    |||| ||||    
T  27067091 tctatccaa 27067099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 27087604 - 27087812
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| ||||||| ||| |||||||||||| ||||||||  ||||||||||||||||| | |||| | | |||| ||||||||| ||||| ||||||||||    
T  27087604 agcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaataaataccgtcttctgtggttttagagtcgacttcaaaat 27087703  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    |||| ||||| | ||||||||  ||||||| ||||||||||||||||||||  |||||||| || |||||||| ||||| |||||||||||| | | |||    
T  27087704 caatgttatcaaggtgcatattgctcgcccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaactggatagacaccaataaagctaattgt 27087803  T
Q  213 tctagccaa 221  Q
    |||| ||||    
T  27087804 tctatccaa 27087812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 54027864 - 54028019
Alignment:
Q  18 agaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaata 117  Q
    ||||||||||| |||||||||||| |||||||| ||||| |||||||||| | |  ||||||| |||||||||||||| |||||||| ||| ||||||||    
T  54027864 agaccgggaagttgtgatgatgttaccaaattcggttatatcttcccgactcgaacaaagagcgtcttttgtggttttagagtcaacctcacaatcaata 54027963  T
Q  118 ttatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttc 173  Q
    ||||| | ||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  54027964 ttatcaaggtgcatatcgctcgcccattgaagcgcatggtaaaggcctagagcttc 54028019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 27066503 - 27066579
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgt 89  Q
    |||| ||||||||||| |||||||||||| ||||||||  ||||||||||||||||| | |||||| | ||||||||    
T  27066503 agcaaagaccgggaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaataaagaccgtcttttgt 27066579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 27066697 - 27066773
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgt 89  Q
    |||| ||||||| ||| |||||||||||| ||||||||  ||||||||||||||||| | |||||| | ||||||||    
T  27066697 agcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaataaagaccgtcttttgt 27066773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 30141095 - 30141303
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaat 112  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||| |||||||||||||||| ||||| |||| |||||    
T  30141095 agcaaagaccgggaagctgtgatgatgtttccacattccgttatgtcttcccgacccgaataaagaccatcttttgtggttttagagtcgactttaaaat 30141194  T
Q  113 caatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgt 212  Q
    |||| ||||| | ||||||||| ||||||| ||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||  | | |||    
T  30141195 caatgttatcaaggtgcatatcgctcgcccattgaagcgcatggtaaaggcccaaagcttccccaatgtcaaccggatagacaccaataaaactaattgt 30141294  T
Q  213 tctagccaa 221  Q
    |||||||||    
T  30141295 tctagccaa 30141303  T

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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 5335371 - 5335557
Alignment:
Q  18 agaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaata 117  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| | |||||||||||||| ||||| |||||||||| |||     
T  5335371 agactgggaagctgtgatgatgtttccaaattcagttatgtcttcccgacccgaataaagaccgtcttttgtggttttagagtcgacttcaaaattaatg 5335470  T
Q  118 ttatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaag 204  Q
    ||||| |  |||||||| ||||||| ||||||||||||||||||| | |||||||| || |||||||||||||| ||||||||||||    
T  5335471 ttatcaagatgcatatcgctcgcccattgaagcgcatggtaaaggtccaaagcttccccaatgtcaaccggatagacaccaataaag 5335557  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 29755116 - 29755318
Alignment:
Q  19 gaccgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatat 118  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||| |||| | |||||| | | |||||||||||| ||||| |||||||||||||| |    
T  29755116 gaccgggaagctatgatgatgtttccaaattccgttatgtcttcccaacccgaataaagaccgttttttgtggttttagagtcgacttcaaaatcaatgt 29755215  T
Q  119 tatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgttctagc 218  Q
    |||| ||||||||||| ||| ||| ||||||||||||||||||| | |||||||| || |||||||||||||| |||||||||||| | | |||||||||    
T  29755216 tatcaaagtgcatatcgctcacccattgaagcgcatggtaaaggtccaaagcttccccaatgtcaaccggatagacaccaataaagctaattgttctagc 29755315  T
Q  219 caa 221  Q
    |||    
T  29755316 caa 29755318  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 26683415 - 26683244
Alignment:
Q  54 tatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatattatctaagtgcatatcactcgcccgttgaagcgca 153  Q
    |||||||||| ||||| |||||||||||||||||||  |||  |||| |||||||||||  |||||||| | ||||||||||||| ||| ||| || |||    
T  26683415 tatgtcttccagacccgagtaaagagcatcttttgtaatttaagagtaaacttcaaaattcatattatcaaggtgcatatcactcacccattggagagca 26683316  T
Q  154 tggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgttctagccaaaaca 225  Q
    |||||||| ||  | ||||| ||||||||||| |||||||||||| ||||  ||| ||||||||||||||||    
T  26683315 tggtaaagaccagatgcttcccctatgtcaacaggatatacaccattaaaactgattgttctagccaaaaca 26683244  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 12370951 - 12371154
Alignment:
Q  22 cgggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatattat 121  Q
    |||||| | ||||| ||||| || | |||||||||||||||||||||| |||||||||||| ||||||  |||| ||||||||||||||||| |||||||    
T  12370951 cgggaaacagtgataatgttaccgacttcagttatgtcttcccgacccgagtaaagagcattttttgtaattttagagtcaacttcaaaatccatattat 12371050  T
Q  122 ctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggatatacaccaataaaggtgactgttctagccaa 221  Q
    | | ||||||||||||| ||  ||| || ||||||||||| || || |||||  |||||||||| |||||||||||| ||||  ||| ||||||||||||    
T  12371051 caaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgtcaacaggatatacaccattaaaactgattgttctagccaa 12371150  T
Q  222 aaca 225  Q
    ||||    
T  12371151 aaca 12371154  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 21263442 - 21263330
Alignment:
Q  24 ggaagctgtgatgatgttgccaaattcagttatgtcttcccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaatcaatattatct 123  Q
    |||||||||||| ||||| |||||||||   ||||||||||  || || ||||| |  |||||| |||||||||| || || |||| ||||||| ||||     
T  21263442 ggaagctgtgataatgttaccaaattcataaatgtcttcccttccaaaataaagcgtgtcttttatggttttggaatccacatcaacatcaatactatca 21263343  T
Q  124 aagtgcatatcac 136  Q
    |  ||||||||||    
T  21263342 agttgcatatcac 21263330  T

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Target: scaffold0643 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 1031 - 870
Alignment:
Q  13 agcagagaccgggaagctgtgatgatgttgccaaattcagttatgtcttc-ccgacccaagtaaagagcatcttttgtggttttggagtcaacttcaaaa 111  Q
    |||| ||||||||| |||||||||||||| |||||||| || || ||||  ||||||| | |||||| | |||||||||||||| ||||| |||||||||    
T  1031 agcatagaccgggaggctgtgatgatgtttccaaattcggtaatatcttttccgacccgaataaagaacgtcttttgtggttttagagtcgacttcaaaa 932  T
Q  112 tcaatattatctaagtgcatatcactcgcccgttgaagcgcatggtaaaggcctaaagcttc 173  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||||||| || ||||||||    
T  931 tcaatattatcaaggtgcatatcgctcgcccattgaagcgcatggtaaagtcccaaagcttc 870  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 27810374 - 27810333
Alignment:
Q  97 gagtcaacttcaaaatcaatattatctaagtgcatatcactc 138  Q
    ||||||||||||||||||||||| || || ||||||||||||    
T  27810374 gagtcaacttcaaaatcaatattgtcaaactgcatatcactc 27810333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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