View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7296_low_2 (Length: 483)
Name: NF7296_low_2
Description: NF7296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7296_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 91 - 466
Target Start/End: Original strand, 26489969 - 26490344
Alignment:
| Q |
91 |
ctaatggtttagagcatcaaattggtacgtacttagtgatataatgagagagtcgcaattataatgaagatacaaatatcaaaggtataataatgtttga |
190 |
Q |
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| T |
26489969 |
ctaatggtttagagcatcaaattggtacgtacttagtgatatagtgagagagtcgcaattataatgaagatacaaatatcaaaggtataataatgtttga |
26490068 |
T |
|
| Q |
191 |
tttattgatattcattacattcatctacgtgattgaccagctaagtagctagcacaaataatgtgagtcattatatttctcatgtgaaatattggtaggt |
290 |
Q |
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| T |
26490069 |
tttattgatattcattacattcatctacgtgattgaccagctaagtagctagcacaaataatgtgagtcattatatttctcatgtgaaatattggtaggt |
26490168 |
T |
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| Q |
291 |
tgcgtgggaatccatttggtgaaatttgtgtgtgtaagatagtcatatttttgtacctattttgtatgagaatttatataaccgagacatagaattgtgt |
390 |
Q |
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| T |
26490169 |
tgcgtgggaatccatttggtgaaatttgtgtgtgtaagatagtcatatttttgtacctattttgtatgagaatttatataaccgagacatagaattgtgt |
26490268 |
T |
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| Q |
391 |
attttttgttggattgtcacgtgtataagccatggactttatggaattttgctttcccttttataccctccttcgt |
466 |
Q |
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| T |
26490269 |
attttttgttggattgtcacgtgtataagccatggactttatggaattttgctttcccttttataccctccttcgt |
26490344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26489881 - 26489936
Alignment:
| Q |
1 |
gttacgaagagttcgtaaaggtaacggcaccaaccctagcaagcaagatgcatgtg |
56 |
Q |
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| T |
26489881 |
gttacgaagtgttcgtaaaggtaacggcaccaaccctagcaagcaagatgcatgtg |
26489936 |
T |
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