View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7296_low_9 (Length: 202)
Name: NF7296_low_9
Description: NF7296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7296_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 29204443 - 29204612
Alignment:
| Q |
15 |
tggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataattagaaaacgtttaaactattctttgatatttttgta |
114 |
Q |
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| T |
29204443 |
tggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataattagaaaacgtttaaactattctttgatatttttgta |
29204542 |
T |
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| Q |
115 |
ggttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattctt |
184 |
Q |
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| T |
29204543 |
ggttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattctt |
29204612 |
T |
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Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 12647432 - 12647264
Alignment:
| Q |
16 |
ggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataattagaaaacgtttaaactattctttgatatttttgtag |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12647432 |
ggtgttatagcttatagaaaccattagaatagaaagtcttgtcaaattaactaactgaataattagaaaacgtttaaactattccttgatatttttgtag |
12647333 |
T |
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| Q |
116 |
gttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattctt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647332 |
gttctgaaaaaggcagatatgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattctt |
12647264 |
T |
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