View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_high_16 (Length: 251)
Name: NF7297_high_16
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 49711704 - 49711937
Alignment:
| Q |
1 |
aaaatataaaaactaaatgcaagttattttttagttacttgtgaattttttatttgccaaaaagtttatcatttgaaaaactagtaacttgcaaaaacta |
100 |
Q |
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| T |
49711704 |
aaaatatagaaactaaatgcaagttattttttagttacttgtgaattttttatttgccaaaaagtttatcatttgaaaaactagtaacttgcaaaaacta |
49711803 |
T |
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| Q |
101 |
gtagcttctgttattaaaggcagaacaatgttaatctatattagtttctggaatggaaaacttgagcatatattttttagtcctactccttgtgtcattg |
200 |
Q |
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| T |
49711804 |
gtagcttctgttattaaaggcagaacaatgttaatctatattagtttctggaatggaaaacttgagcatatattttttagtcctactccttgtgtcattg |
49711903 |
T |
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| Q |
201 |
gccttgccgaaagaaaataagggaaggaagatgt |
234 |
Q |
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| T |
49711904 |
gccttgccgaaagaaaataagggaaggaagatgt |
49711937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 49247378 - 49247436
Alignment:
| Q |
37 |
acttgtgaattttttatttgccaaaaagtttatcatttgaaaaactagtaacttgcaaa |
95 |
Q |
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||||| |||||||| | ||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
49247378 |
acttgcgaatttttaacttgccaaaatgttaatcatttgaaaaactagtaacttgcaaa |
49247436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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