View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_10 (Length: 402)
Name: NF7297_low_10
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 388
Target Start/End: Complemental strand, 8810332 - 8809966
Alignment:
| Q |
22 |
ccgtggccggagtcatcgaattggcagccggttcttccccagaatctacctgaccatccggttggtgcttggaaggttctggaagttccttttgcgagct |
121 |
Q |
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| T |
8810332 |
ccgtggccggagtcatcgaattggcagccggttcttccccagaatctacctgaccatccggttggtgcttggaaggttctggaagttccttttgcgagct |
8810233 |
T |
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| Q |
122 |
cgaaaccagtagttccaagttccggtcttccataaattcctggccatactgtgtaatcacacttgttcataaatgtaaatgttgcccctgaaactaaaac |
221 |
Q |
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| T |
8810232 |
cgaaaccagtagttccaagttccggtcttccataaattcctggccatactgtgtaatcacacttgttcataaatgtaaatgttgcccctgaaactaaaac |
8810133 |
T |
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| Q |
222 |
ccctgcatttgnnnnnnnnnnnnnnnnnncataaacagttatttaannnnnnnnngtgaattctaaaagaaagaaacatgacactcaattttgttgaatt |
321 |
Q |
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| T |
8810132 |
ccctgcatttgaaaaagtaaaagaaaaaacataaacagttatttaatttttttttgtgaattctaaaagaaagaaacatgacactcaattttgttgaatt |
8810033 |
T |
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| Q |
322 |
aatgaaagaactgaaatttacctttgaaaatgaggaagagtatgacgcataagaagggctgaggata |
388 |
Q |
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| T |
8810032 |
aatgaaagaattgaaatttacctttgaaaatgaggaagagtatgacgcataagaagggctgaggata |
8809966 |
T |
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Back To:
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 31936087 - 31936255
Alignment:
| Q |
37 |
tcgaattggcagccggttcttccccagaatctacctgaccatccggttggtgcttggaaggttctggaagttccttttgcgagctcgaaaccagtagttc |
136 |
Q |
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| T |
31936087 |
tcgaatttgcaaccggttcttgcccagaatctacctgaccaaccggctagtgcttggaaggtttgtgtatttccttttttgagttcaaaaccggttgttc |
31936186 |
T |
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| Q |
137 |
caagttccggtcttccataaattcctggccatactgtgtaatcacacttgttcataaatgtaaatgttg |
205 |
Q |
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| T |
31936187 |
cgaggtctggttttcctagaattcctggccatattgtgtggtcacatttgttcacgaatgtgaatgttg |
31936255 |
T |
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