View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_12 (Length: 378)
Name: NF7297_low_12
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 9591391 - 9591752
Alignment:
| Q |
1 |
atgatcttggatctcatattcttcatcatggtgataactttaattggagttttggatatggcttttttaaacaaacactattctattgttcctttcaatg |
100 |
Q |
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| T |
9591391 |
atgatcttggatctcatattcttcatcatggtgataactttaattggagttttggatatggcttttttaaacaaacactatttcattgttcctttcaatg |
9591490 |
T |
|
| Q |
101 |
gaataatgagttacattcgtttaatatagttgaatcaggtagagataaatgttttgattgcctttggtatatacgagaatcaggaacatgtcttgttgta |
200 |
Q |
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| T |
9591491 |
gaataatgagttacattcgtttaatatagttgaatcaggtagagatgaatgttttgattgcctttggtatatacgagaatcaggaccatgtcttgttgaa |
9591590 |
T |
|
| Q |
201 |
ggaggttccggtattattagttgtattccttgggaaaagtaatgcactattactnnnnnnntatatttgaataaatgatgtatttgaggtattaataatc |
300 |
Q |
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| T |
9591591 |
ggaggttcc---cctgatagttgtattccttggaaaaagtaatgcactattactaaaaatatatatttgaataaattatgtatttgaggtattaataatc |
9591687 |
T |
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| Q |
301 |
aatgtattctctatctttttgtttgcatgaaaccctaatttcaatcttaaatcttaattctctat |
365 |
Q |
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| T |
9591688 |
aatgtattctctatctttttgtttgcatgaaaccctaatttcaatcttaaatcttaattctctat |
9591752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26545493 - 26545528
Alignment:
| Q |
1 |
atgatcttggatctcatattcttcatcatggtgata |
36 |
Q |
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| T |
26545493 |
atgatcttggatctcatcttcttcatcatggtgata |
26545528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26550934 - 26550969
Alignment:
| Q |
1 |
atgatcttggatctcatattcttcatcatggtgata |
36 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
26550934 |
atgatcttggatctcatcttcttcatcatggtgata |
26550969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 25163641 - 25163608
Alignment:
| Q |
80 |
attctattgttcctttcaatggaataatgagtta |
113 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
25163641 |
attctattgttcctttcaatggaatgatgagtta |
25163608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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