View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_14 (Length: 325)
Name: NF7297_low_14
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 5227509 - 5227800
Alignment:
| Q |
19 |
taatatgctttaaattaagcatttatcgaattaaatttcattttgcattttacatgcacatgtcttaatcaaatccaaaaaagcataacaatgtataatt |
118 |
Q |
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| T |
5227509 |
taatatgctttaaattaagcatttatcgaattaaatttcatcttgcattttacatgcacatgtcttaatcaaatccaaaaaagcataacaatgtataatt |
5227608 |
T |
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| Q |
119 |
gtaatgtaacatgcaacagccatgtcttaatcaatcggtcactgttctgttcttagcttcatgagagtgaagaccaccaactctgagaagatggtgaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5227609 |
gtaatgtaacatgcaacagccatgtcttaatcaatcggtcactgttctgttcttagcttcatgagagtgaagaccaccaactctgagaagatggtgaaga |
5227708 |
T |
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| Q |
219 |
caaattcaattccaacaaacctgattgctttgtcacaccactactctcctgagattgcacccccttgttccaactagttgagaccacttgat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5227709 |
caaattcaattccaacaaacctgattgctttgtcacaccactactctcctgagattgcacccccttgttccaactagttgagaccacttgat |
5227800 |
T |
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