View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7297_low_2 (Length: 658)
Name: NF7297_low_2
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 614
Target Start/End: Complemental strand, 25928736 - 25928136
Alignment:
| Q |
13 |
tggtggtgtaggcttgagaccttctgagtatactcttctaatggtctagggtttgaatagtctatacaaaattttgctataacttttaatagaccccttg |
112 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25928736 |
tggtggtataggcttgagaccttc-gagtatacaattctaatggtctcgggtttgaatagtctatacaaaattttgctataacttttaatagacccattg |
25928638 |
T |
|
| Q |
113 |
ctagtgaggaaaatacttgggtgactttgagatttgggtgattttaatagtgaagggtggaattgatcctccacaatatttggtcattgagctgatgttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25928637 |
ttagtgaggaaaatacttgggtgactttgagatttgggtgattttaattgtgaagggtggaattgatcctccacaatatttggtcattgagctgatgttt |
25928538 |
T |
|
| Q |
213 |
ggttttnnnnnnnnnnnnnttatgcttttttatcttaattaaattgtatgtaggtgattggaactgaggctagaggagtgtacaatgctggacaagctca |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25928537 |
ggttttcaaaaaaaaaaaattatgcttttttatcttaattaaattgtatgtaggtgattggaactgaggctagaggagtgtacaatgctggacaagctca |
25928438 |
T |
|
| Q |
313 |
agggatgacgttttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaag |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25928437 |
agggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaag |
25928338 |
T |
|
| Q |
413 |
tatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgcttgttgcaaacacttta |
512 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
25928337 |
tatggtgtttcctatgtaagaggacttcaaggagattcctttgaaggtggaaaactgattggagatcgtcttaaagcttctgcttgttgcaaacatttta |
25928238 |
T |
|
| Q |
513 |
ctgcctatgatttggatcattggaagggtttggatcgttttgattttgatgccaaagtaagttttcttttctctatggtatattgtccttggatgattaa |
612 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
25928237 |
ctgcctatgatttggataattggaagggtttggaccgttttgattttgatgccaaagtaagttttcttttctctatggcatatagtccttggatgattaa |
25928138 |
T |
|
| Q |
613 |
tt |
614 |
Q |
| |
|
|| |
|
|
| T |
25928137 |
tt |
25928136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 264 - 622
Target Start/End: Complemental strand, 25888040 - 25887684
Alignment:
| Q |
264 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25888040 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatg |
25887941 |
T |
|
| Q |
364 |
gggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtggg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25887940 |
gggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtggg |
25887841 |
T |
|
| Q |
464 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatgatttggatcattggaagggtttggatcgttttgattttgatg |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| || ||| |||| |
|
|
| T |
25887840 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatgatttggaaaattggaagggtgtgaatcgttatgttttcgatg |
25887741 |
T |
|
| Q |
564 |
ccaaagtaagttttcttttctctatggtatattgtccttggatgattaattcaatggtg |
622 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |||||||||||| |||||| |
|
|
| T |
25887740 |
ccaaagtaagttttcttttctctatggttta--gtccttcgatgattaattctatggtg |
25887684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 264 - 615
Target Start/End: Complemental strand, 25910647 - 25910298
Alignment:
| Q |
264 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
25910647 |
aggtgattggaactgaggctagaggagtatacaatgctggacaagcccaagggatgaatttttgggcaccaaacataaacatattcagggacccaagatg |
25910548 |
T |
|
| Q |
364 |
gggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtggg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25910547 |
gggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtggg |
25910448 |
T |
|
| Q |
464 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatgatttggatcattggaagggtttggatcgttttgattttgatg |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| || |||||||| |
|
|
| T |
25910447 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatgatttggaaaattggaagggtgtgaatcgttatgtttttgatg |
25910348 |
T |
|
| Q |
564 |
ccaaagtaagttttcttttctctatggtatattgtccttggatgattaattc |
615 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||| ||||||||||||||| |
|
|
| T |
25910347 |
ccaaagtaagttttcttgtctctatggttta--gtctttggatgattaattc |
25910298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 264 - 581
Target Start/End: Original strand, 25957135 - 25957452
Alignment:
| Q |
264 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatg |
363 |
Q |
| |
|
||||||||||||| || || || | ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25957135 |
aggtgattggaaccgaagcaagggcagtgtacaatgctggacaagcagaggggatgacattttgggcaccaaacataaacatatttagggacccaagatg |
25957234 |
T |
|
| Q |
364 |
gggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtggg |
463 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| | | |||||||||||||||| | ||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
25957235 |
gggaagagggcaagagacagctggtgaagatcctttggtaagtgcaaagtatgctgtttcctttgtgagaggtcttcaaggtgattcctttgaaggtggg |
25957334 |
T |
|
| Q |
464 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatgatttggatcattggaagggtttggatcgttttgattttgatg |
563 |
Q |
| |
|
||||| | || || |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
25957335 |
aaacttaatgaagatcgtcttaaagcttctgcttgttgtaaacactttactgcctatgatttggataattggaaaggtgtggatcgttttgactttgatg |
25957434 |
T |
|
| Q |
564 |
ccaaagtaagttttcttt |
581 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
25957435 |
ccaatgtaagttttcttt |
25957452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 314 - 541
Target Start/End: Complemental strand, 33423731 - 33423507
Alignment:
| Q |
314 |
gggatgacgttttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagt |
413 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| ||| || | |
|
|
| T |
33423731 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
33423632 |
T |
|
| Q |
414 |
atgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttac |
513 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| ||| |||| || ||| ||| | || | ||| |||||||||||||||||||||| || || |
|
|
| T |
33423631 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaattga---ggggacaccttcaagcttctgcttgttgcaaacatttcac |
33423535 |
T |
|
| Q |
514 |
tgcctatgatttggatcattggaagggt |
541 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
33423534 |
tgcctatgatttggacaattggaagggt |
33423507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 37610214 - 37610288
Alignment:
| Q |
325 |
ttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatccttt |
399 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | || ||||| ||||| |
|
|
| T |
37610214 |
ttggtcaccaaacattaacatatttagggatccaagatggggaagaggtcaagaaacaccaggagaagacccttt |
37610288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 1370267 - 1370192
Alignment:
| Q |
325 |
ttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttg |
400 |
Q |
| |
|
|||| ||||||||||||||||||| || || |||||||||||||| |||||||||||| | |||||||| |||||| |
|
|
| T |
1370267 |
ttggtcaccaaacattaacatattcagagatccaagatggggaaggggacaagaaacaccaggtgaagaccctttg |
1370192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University