View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_20 (Length: 240)
Name: NF7297_low_20
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 28251225 - 28251112
Alignment:
| Q |
130 |
caatcttttatgtttctatcatgaatgaacaccatctgctccttgtaaactattgaatg---tattgtagccagtctatctgctataattttagaaatga |
226 |
Q |
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| T |
28251225 |
caatcttttatgtttctatcatgaatgaacaacatctgctccttgtaaactattgaatgtattattgtagccagtctatctgctataattttagtaatga |
28251126 |
T |
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| Q |
227 |
ttttaaatttgaaa |
240 |
Q |
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| T |
28251125 |
ttttaaatttgaaa |
28251112 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 28251262 - 28251219
Alignment:
| Q |
19 |
aaataccattcaagagtatcaaaagcttttctaatgtcaatctt |
62 |
Q |
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| T |
28251262 |
aaataccattcaagagtatcaaaagcttttctaatgtcaatctt |
28251219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 12238982 - 12239045
Alignment:
| Q |
109 |
gcttaagatgcaatgcagaggcaatcttttatgtttctatcatgaatgaacaccatctgctcct |
172 |
Q |
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| T |
12238982 |
gcttcagaggcaatgcaaaggcaatctttgatgtttctatcatttatgaatcccatctgctcct |
12239045 |
T |
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