View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7297_low_21 (Length: 239)
Name: NF7297_low_21
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1071268 - 1071046
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaagtattagaatatga |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1071268 |
catctacctagatactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaagtatcagaatatga |
1071169 |
T |
|
| Q |
101 |
acattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaaacacgtgcttgtagctctagat |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1071168 |
acattgttcaattctacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaaacacgtgcttgtagctctagat |
1071069 |
T |
|
| Q |
201 |
ttcataattgaaaacgagcatct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1071068 |
ttcataattgaaaacgagcatct |
1071046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7953554 - 7953341
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaag-tattagaatatg |
99 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| || ||| |
|
|
| T |
7953554 |
catctacctaggtgctcaattcctctttgaattcatcaactttaacaaatttcaagtttacaagggttttgacctgtcaccaacaaggtattacaacatg |
7953455 |
T |
|
| Q |
100 |
aacattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaaacacgtgcttgtagctctaga |
199 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| | |
|
|
| T |
7953454 |
aacattgttcaattccacatcgcatgttaagcatcaccaatcatccttattatgattttattgtgattgatttttcaaaacacgtgcttgaatccctata |
7953355 |
T |
|
| Q |
200 |
tttcataattgaaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7953354 |
tttcataattgaaa |
7953341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1372022 - 1371808
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaag-tattagaatatg |
99 |
Q |
| |
|
||||||| ||| ||||| |||| |||||||| ||||||||| | |||||| |||| ||||||| | |||||||||||| |||||| ||| |||||| |
|
|
| T |
1372022 |
catctacttagatactcgattcctctatgaaatcatcaactcagataaaatttaagtctataaggatcttgacttgtcacaaacaaggtatctgaatata |
1371923 |
T |
|
| Q |
100 |
aacattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaaacacgtgcttgtagctctaga |
199 |
Q |
| |
|
|||||||||| ||| |||||||| | ||| | |||||||||||| || |||||||||||| |||| ||||||||||||||||| || ||| |||| || | |
|
|
| T |
1371922 |
aacattgttcgattccacatcacatattaggtatcaccaataattctgattatgattttactgtgcttgatttttgaaaacacatgtttgaagctttata |
1371823 |
T |
|
| Q |
200 |
tttcataattgaaaa |
214 |
Q |
| |
|
||||| | ||||||| |
|
|
| T |
1371822 |
tttcagagttgaaaa |
1371808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1381954 - 1381776
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaag-tattagaatatg |
99 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||||| ||| | | ||||||||||||||||||||| ||||| | ||||||| ||| ||| ||| ||| |
|
|
| T |
1381954 |
catctacttaggtacttaattcctctatgaaatcatccactctgataaaattcaagtttataagggtcttgacctttcaccaataaggtatcagaggatg |
1381855 |
T |
|
| Q |
100 |
aacattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaa |
178 |
Q |
| |
|
|||||||||||||| |||||||| | ||| | ||||||||||| || | |||||||| |||||||||||||||||||| |
|
|
| T |
1381854 |
aacattgttcaattccacatcacatattagacgtcaccaataattctgaatatgatttcattgtgattgatttttgaaa |
1381776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1388058 - 1387880
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaag-tattagaatatg |
99 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||||| ||| | | ||||||||||||||||||||| ||||| | ||||||| ||| ||| ||| ||| |
|
|
| T |
1388058 |
catctacttaggtacttaattcctctatgaaatcatccactctgataaaattcaagtttataagggtcttgacctttcaccaataaggtatcagaggatg |
1387959 |
T |
|
| Q |
100 |
aacattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaa |
178 |
Q |
| |
|
|||||||||||||| |||||||| | ||| | ||||||||||| || | |||||||| |||||||||||||||||||| |
|
|
| T |
1387958 |
aacattgttcaattccacatcacatattagacgtcaccaataattctgaatatgatttcattgtgattgatttttgaaa |
1387880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 7952195 - 7952408
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaagtattagaatatga |
100 |
Q |
| |
|
||||||| ||| |||||||||| | |||| | |||||||||| ||| ||||||||||| |||||| | ||| |||||||||||| || ||||| | | |
|
|
| T |
7952195 |
catctacgtagatactcaattcctttatggaatcatcaacttcaacgaaattcaagttcataaggatcctgagttgtcaccaacagatacgagaatctca |
7952294 |
T |
|
| Q |
101 |
acattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaaacacgtgcttgtagctctagat |
200 |
Q |
| |
|
|| || ||||||| |||||||| ||||| |||||| |||| ||||| ||||||| |||| ||||| | ||||||| |||||| |||||| ||||||| || |
|
|
| T |
7952295 |
acgttcttcaattccacatcacatgttaggcatcatcaattatcctgattatgaatttaatgtgacttatttttgcaaacacatgcttgaagctctatat |
7952394 |
T |
|
| Q |
201 |
ttcataattgaaaa |
214 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
7952395 |
ttcatagttgaaaa |
7952408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1355681 - 1355503
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaag-tattagaatatg |
99 |
Q |
| |
|
|||||||||| ||||| |||| ||| |||| ||||||||| | ||||||||||| |||| |||| ||||| | || |||||||| ||||||| |||| |
|
|
| T |
1355681 |
catctacctaagtacttgattcctctttgaaatcatcaactcagataaaattcaagtctatacgggtcttgacctttcgccaacaaggtattagagtatg |
1355582 |
T |
|
| Q |
100 |
aacattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattgatttttgaaa |
178 |
Q |
| |
|
|||||||||| ||| ||||||| | ||| || ||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
1355581 |
aacattgttcgattcgacatcacatattaggcgtcagcaataattaggattatgatttcattgtgattgatttttgaaa |
1355503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 1069933 - 1070078
Alignment:
| Q |
69 |
ttgacttgtcaccaacaagtattagaatatgaacattgttcaatttcacatcacttgttaagcatcaccaataatccttattatgattttattgtgattg |
168 |
Q |
| |
|
|||| |||||||||||| ||| ||||| | ||| |||||||||| |||||||| ||||| | |||| |||| ||||| ||||||| || || ||||||| |
|
|
| T |
1069933 |
ttgatttgtcaccaacaggtacgagaatctcaacgttgttcaattccacatcacatgttaggtatcatcaattatcctaattatgaattcatagtgattg |
1070032 |
T |
|
| Q |
169 |
atttttgaaaacacgtgcttgtagctctagatttcataattgaaaa |
214 |
Q |
| |
|
||||||| |||||| || ||| |||| || |||||||| ||||||| |
|
|
| T |
1070033 |
atttttgcaaacacatgtttgaagctttatatttcatagttgaaaa |
1070078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 1115533 - 1115461
Alignment:
| Q |
13 |
tactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaaca |
85 |
Q |
| |
|
||||||| || | |||||| |||||||||||||| |||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
1115533 |
tactcaaatcctttatgaaatcatcaactttaacgaaattcaagtttataaagattttgagttgtcaccaaca |
1115461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 1115331 - 1115440
Alignment:
| Q |
13 |
tactcaattcttctatgaattcatcaactttaacaaaattcaagtttataagggttttgacttgtcaccaacaagtattagaatatgaacattgttcaat |
112 |
Q |
| |
|
|||||||||| | |||||| ||||||||| ||| |||||||| ||||||||| | |||| || ||||||||| ||| ||||| | |||||||||||| |
|
|
| T |
1115331 |
tactcaattcctttatgaaatcatcaactccaacgaaattcaaatttataaggatcttgagttatcaccaacaggtacgagaatcttaacattgttcaag |
1115430 |
T |
|
| Q |
113 |
ttcacatcac |
122 |
Q |
| |
|
| |||||||| |
|
|
| T |
1115431 |
tacacatcac |
1115440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 27843083 - 27843115
Alignment:
| Q |
84 |
caagtattagaatatgaacattgttcaatttca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27843083 |
caagtattagaatatgaacattgttcaatttca |
27843115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1381442 - 1381502
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttat |
61 |
Q |
| |
|
||||||| |||||||| | |||||||||||| || |||| ||||| ||||||||| ||||| |
|
|
| T |
1381442 |
catctacttaggtactaatttcttctatgaaatcttcaattttaataaaattcaaatttat |
1381502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1387546 - 1387606
Alignment:
| Q |
1 |
catctacctaggtactcaattcttctatgaattcatcaactttaacaaaattcaagtttat |
61 |
Q |
| |
|
||||||| |||||||| | |||||||||||| || |||| ||||| ||||||||| ||||| |
|
|
| T |
1387546 |
catctacttaggtactaatttcttctatgaaatcttcaattttaataaaattcaaatttat |
1387606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University