View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_22 (Length: 215)
Name: NF7297_low_22
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 1071450 - 1071643
Alignment:
| Q |
8 |
acaatctaaagataagaacaacacaaaaagaatatttaaaactacaacaaataattttgatctagaatccaaatgcattatttctagatatcttcttagt |
107 |
Q |
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| T |
1071450 |
acaatctaaagataagaacaacacaaaaagaatatttaaaattacaacaaataattttgatctagaatccaaatgcattatttctagatatcttcttagt |
1071549 |
T |
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| Q |
108 |
aaaggatatgtgttatatcaagaagattgttgatcaaaactcttttgtaaagtgagaactttg-ttttttaatagtatatgaattaacttaatat |
201 |
Q |
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| T |
1071550 |
-aaggatatgagttatatcaagaagattgttgatcaaaactcttttgtaaagtgagaactttgtttttttaatagtatatgaattaacttaatat |
1071643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 7953896 - 7954042
Alignment:
| Q |
54 |
acaaataattttgatctagaatccaaatgcattatttctagatatcttcttagtaaaggatatgtgttatatcaagaagattgttgatcaaaactctttt |
153 |
Q |
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| T |
7953896 |
acaaataattttgacctagaatcaaaatacattattcctagatatcttctttgtaa-ggatatgatttatatcaagaagattgttgattgaaactctttt |
7953994 |
T |
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| Q |
154 |
gtaaagtgagaactttgttttttaatagtatatgaattaacttaatat |
201 |
Q |
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| T |
7953995 |
ataaagtgagaactttgttttttaatagtatacgaattaacttaatat |
7954042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 1117534 - 1117591
Alignment:
| Q |
144 |
aaactcttttgtaaagtgagaactttgttttttaatagtatatgaattaacttaatat |
201 |
Q |
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| T |
1117534 |
aaactcttttgtaaagtgagaactttgttatttaatagtatatgaattaacttaatat |
1117591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 1071371 - 1071425
Alignment:
| Q |
10 |
aatctaaagataagaacaacacaaaaagaatatttaaaactacaacaaataattt |
64 |
Q |
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| T |
1071371 |
aatctaaagataagaactacacaaaaagaatatttaaaactacaacaaataattt |
1071425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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