View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_23 (Length: 208)
Name: NF7297_low_23
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 11621785 - 11621960
Alignment:
| Q |
19 |
ttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatatttatactttagtacagaagtcaaataagtatacgaacatgtat |
118 |
Q |
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| T |
11621785 |
ttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattcatactttagtacagaagtcaaataagtatacgaacatgtat |
11621884 |
T |
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| Q |
119 |
ataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatttaattgataatattct |
194 |
Q |
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| T |
11621885 |
ataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatttaattgataatattct |
11621960 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 11640305 - 11640439
Alignment:
| Q |
58 |
cacaaattagaactatatttatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcag |
157 |
Q |
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| T |
11640305 |
cacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcgtgttgatttatcaa |
11640404 |
T |
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| Q |
158 |
agata--ttaagaatacctaatttaattgataata |
190 |
Q |
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| T |
11640405 |
agatattttaaaaatacctgatttcattgataata |
11640439 |
T |
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