View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7297_low_3 (Length: 551)

Name: NF7297_low_3
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7297_low_3
NF7297_low_3
[»] chr2 (27 HSPs)
chr2 (18-533)||(39129155-39129667)
chr2 (18-534)||(39495431-39495947)
chr2 (128-383)||(27154981-27155236)
chr2 (18-198)||(39422377-39422557)
chr2 (39-190)||(39474186-39474337)
chr2 (18-203)||(39458208-39458393)
chr2 (39-203)||(39136280-39136444)
chr2 (18-203)||(39488078-39488263)
chr2 (39-203)||(39151897-39152061)
chr2 (39-203)||(39416278-39416445)
chr2 (18-188)||(39123536-39123706)
chr2 (47-198)||(39601995-39602146)
chr2 (18-383)||(39427579-39427932)
chr2 (360-431)||(21435737-21435808)
chr2 (47-194)||(39214933-39215080)
chr2 (87-197)||(39199439-39199549)
chr2 (117-198)||(39450503-39450584)
chr2 (134-198)||(39382217-39382281)
chr2 (160-198)||(39399043-39399081)
chr2 (154-196)||(39479182-39479224)
chr2 (117-190)||(39391653-39391726)
chr2 (113-172)||(2360942-2361001)
chr2 (132-203)||(44623618-44623689)
chr2 (355-401)||(44896531-44896577)
chr2 (141-203)||(44896356-44896418)
chr2 (359-395)||(39466956-39466992)
chr2 (134-186)||(44614489-44614541)
[»] chr7 (1 HSPs)
chr7 (39-203)||(19806641-19806805)
[»] chr6 (1 HSPs)
chr6 (160-201)||(16112425-16112466)
[»] chr8 (1 HSPs)
chr8 (349-409)||(44951527-44951587)
[»] chr5 (2 HSPs)
chr5 (138-190)||(33559635-33559687)
chr5 (134-198)||(17058845-17058909)
[»] chr4 (1 HSPs)
chr4 (141-186)||(33151002-33151047)


Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 39129667 - 39129155
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129667 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 39129568  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttgnnnnnnnnnnnngc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||             ||    
T  39129567 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttgtt---ttttctttttgc 39129471  T
Q  218 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagtgacttatcagcagatttaccaactggcattgcaaggctcctcgataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39129470 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagtgacttatcagcagatttaccaactggcattgcaaggctcctcgacaa 39129371  T
Q  318 aggagtatcgtctttatctttacgttgactatcatacggtaacacctttgatttcttaacagaagtgttcaaggaacttctgttatcaaataatggtctc 417  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39129370 aggagtatcgtctttatctttacgttgattatcatatggtaacacctttgatttcttaacagaagtgttcaaggaacttctgttgtcaaataatggtctc 39129271  T
Q  418 ttaactagcaatgacactggagcagtattatgcctcttcttaataggaacatcacggttggtagtccatgttccagaatgcgacatccgggataaccttt 517  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129270 ttaactggcaatgacactggagcagtattatgcctcttcttaataggaacatcacggttggtagtccatgttccagaatgcgacatccgggataaccttt 39129171  T
Q  518 gtgacaaagagacatc 533  Q
    ||||||||||||||||    
T  39129170 gtgacaaagagacatc 39129155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 39495431 - 39495947
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||  |||| |||||||| || | ||| ||| || || || ||  |    
T  39495431 catcaaacagagctgtgcttgctttgctgcaaaatccttgacgcattcttcaattttttcctgcattttcttatgggattcgttagttatttcaacaaaa 39495530  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttgnnnnnnnnnnnngc 217  Q
    || ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||            ||    
T  39495531 ctcatttccttttttatatttccaagctctttggagcgctcctcaatatctctctttatggactgcaatctctcctcttcttcgtgtcttttctttttgc 39495630  T
Q  218 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagtgacttatcagcagatttaccaactggcattgcaaggctcctcgataa 317  Q
    | |||| ||||||||||||||||||||||| ||||||| |  ||||||||||||| |||| | ||||||||||||| ||||||||||| |||||||| ||    
T  39495631 actcgtgaaatgatttttctaccaatgcaagttctttctttagcgaagaaagtgatttataatcagatttaccaaccggcattgcaagtctcctcgacaa 39495730  T
Q  318 aggagtatcgtctttatctttacgttgactatcatacggtaacacctttgatttcttaacagaagtgttcaaggaacttctgttatcaaataatggtctc 417  Q
    ||||||||| |||||||||||| ||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39495731 aggagtatcatctttatctttatgttgattaacatatggtgacacctttgatttcttaacagaagtgttcaaggaacttctgttatcaaataatggcctc 39495830  T
Q  418 ttaactagcaatgacactggagcagtattatgcctcttcttaataggaacatcacggttggtagtccatgttccagaatgcgacatccgggataaccttt 517  Q
    |||||| ||||||||| |  ||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||  | ||||||||||||||||||    
T  39495831 ttaactggcaatgacattaaagcagtattatgcctcttcttaagagtaacatcacggtcggtactccatgttccagaactcaacatccgggataaccttt 39495930  T
Q  518 gtgacaaagagacatct 534  Q
    ||||||||| |||||||    
T  39495931 gtgacaaagggacatct 39495947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 128 - 383
Target Start/End: Original strand, 27154981 - 27155236
Alignment:
Q  128 ttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttgnnnnnnnnnnnngcaatcgttaaa 227  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||            | | || | |||    
T  27154981 ttttcatatttccaagctctttggagcactcctcaatatctctctttatggactgcaatctttcctcttcttcttgtcttttctttttgaattcttcaaa 27155080  T
Q  228 tgatttttctaccaatgcaaattctttcctcggcgaagaaagtgacttatcagcagatttaccaactggcattgcaaggctcctcgataaaggagtatcg 327  Q
    | |||||||||||||  ||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| ||| |||| ||||||||||||    
T  27155081 taatttttctaccaaatcaaattctttcttcggggaagaaagtgacttatcggcagatttaccaaccggcattgcaagtctcgtcgacaaaggagtatcg 27155180  T
Q  328 tctttatctttacgttgactatcatacggtaacacctttgatttcttaacagaagt 383  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||||||| ||||    
T  27155181 tctttatctttacgttgattatcatatggtgacacttttgatttcttaacacaagt 27155236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 39422377 - 39422557
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||| | || |||| || ||||||| | || |||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||||    
T  39422377 catcaaagagagctgtgattcctttgctacgaattcctcgacacattcttcaattttcccctgcattttcttgtatgcttccttaattcttccaacatca 39422476  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 198  Q
    ||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||    
T  39422477 ctaatttcctttttcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttct 39422557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 39474186 - 39474337
Alignment:
Q  39 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 138  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||| |||||||| ||||||| |||||    
T  39474186 ctttgctacaaaatccttgacacattcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgactaattttctttttcttattt 39474285  T
Q  139 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 190  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  39474286 tcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctct 39474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 39458393 - 39458208
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||| | |||||||||| ||||||||||||||||| |||||||| |||||||||  ||| |||||||||| ||||||| | |||||||||| ||| |    
T  39458393 catcaaatagagttgtgcttcctttgctgcaaaatcctcgacacatttttcaattttggcctcgattttcttgcgagcttcgtcaattcttccaacataa 39458294  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
     || ||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39458293 atagtttcctttttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctacttg 39458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 39136444 - 39136280
Alignment:
Q  39 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 138  Q
    ||||||| ||||||||||||||||||| |||||||| ||||| ||||||||| |||||||  ||||||||||| |||| ||||||||||||||| |||||    
T  39136444 ctttgctacaaaatccttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatccctaatttcctttttcttattt 39136345  T
Q  139 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    ||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  39136344 tcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttg 39136280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 39488078 - 39488263
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||| | || ||| ||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||| ||  |    
T  39488078 catcaaatatagctgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttctagtgaacttcgttaattcttccaacacaa 39488177  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||  ||||||| ||||    
T  39488178 ctaatttcctttttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctacttg 39488263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 39152061 - 39151897
Alignment:
Q  39 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 138  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||||||| ||    |||||||||||||| |||||    
T  39152061 ctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattt 39151962  T
Q  139 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    ||||||||||||||||  |||||||||| ||||||||| ||||||| ||||||||||||| ||||    
T  39151961 tcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctacttg 39151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 39416278 - 39416445
Alignment:
Q  39 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttcct---taattcttccagcatcactaatttcctttttcata 135  Q
    ||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||||||||| |   ||||||||||| ||| |||||||||||||| | ||    
T  39416278 ctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgctta 39416377  T
Q  136 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    |||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  39416378 ttttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttcttttctacttg 39416445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 39123706 - 39123536
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||| | ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||| ||||||||||||| ||| | ||||||| || ||| |    
T  39123706 catcaaagagagttgtgcttgctttacaagaaaatccttgacaaattcttcagtttttccctgcattttcttgtgagattcgtaaattctttcaacataa 39123607  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatct 188  Q
    || ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||||    
T  39123606 ctcatttcctttttcatattttcaagatctttggagcacccctcaatatctctctgtatggagtgcaatct 39123536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 39602146 - 39601995
Alignment:
Q  47 caaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctc 146  Q
    |||||||||| | ||||||||||||||| ||||| |||||||  ||||||||   ||||| || |  |  |||||||||||||||| |||||||||||||    
T  39602146 caaaatccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaatttcctttttcttattttcaagctc 39602047  T
Q  147 tttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 198  Q
    ||||  |||||||| ||||||| ||||||||||||||||||| |||||||||    
T  39602046 tttgcggcactcctgaatatctatctttatggactgcaatctattctcttct 39601995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 39427579 - 39427932
Alignment:
Q  18 catcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatca 117  Q
    ||||||||| || ||||||| ||||||  ||||||||||||||||||| |||| ||  ||||| | ||||||||||| ||| ||| | ||         |    
T  39427579 catcaaacagagctgtgctttctttgcatcaaaatccttgacacattcatcaaattctccctgcaatttcttgtgagattcattagtgct---------a 39427669  T
Q  118 ctaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttgnnnnnnnnnnnngc 217  Q
    |||| |||||||||||| ||| | |||||| ||||||||||||| || ||||||||||||||   |||||||| |||||||  |||             |    
T  39427670 ctaacttcctttttcatctttccgagctctatggagcactcctcgatctctctctttatggaaatcaatctctcctcttctcgttgtttcttctttttac 39427769  T
Q  218 aatcgttaaatgatttttctaccaatgcaaattctttcctcggcgaagaaagtgacttatcagcagatttaccaactggcattgcaaggctcctcgataa 317  Q
    | || | ||||||||||||||||||| ||| ||||||| ||  |||||||| ||| |||||||  |||||  |  | || ||| |||  ||||| || ||    
T  39427770 attcctcaaatgatttttctaccaatacaagttctttcttcaacgaagaaaatgatttatcagtcgattt--cttc-ggaatttcaactctccttgacaa 39427866  T
Q  318 aggagtatcgtctttatctttacgttgactatcatacggtaacacctttgatttcttaacagaagt 383  Q
    |||||||  ||||||||||||||   || ||||||| |||||||||||| ||||||||||||||||    
T  39427867 aggagtactgtctttatctttactgggattatcatatggtaacacctttaatttcttaacagaagt 39427932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 360 - 431
Target Start/End: Original strand, 21435737 - 21435808
Alignment:
Q  360 cacctttgatttcttaacagaagtgttcaaggaacttctgttatcaaataatggtctcttaactagcaatga 431  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||  |||||||| |||||||    
T  21435737 cacctttgatttcctaacagaagtgttcaaggagcttctgttgtcaaataatggcatcttaactggcaatga 21435808  T

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Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 39215080 - 39214933
Alignment:
Q  47 caaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctc 146  Q
    |||||||||| | ||||||||||||||| ||||| |||||||  ||||| || | |||||||| | ||  ||| |  |   | ||| |||||||||||||    
T  39215080 caaaatccttaatacattcttcaatttttccctgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttattttcaagctc 39214981  T
Q  147 tttggagcactcctcaatatctctctttatggactgcaatctcttctc 194  Q
    |||  |||||||||||| || |||||||||||||||||||||||||||    
T  39214980 tttacagcactcctcaacatatctctttatggactgcaatctcttctc 39214933  T

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Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 39199439 - 39199549
Alignment:
Q  87 cttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaat 186  Q
    |||| ||||||| | |||||||| | || |||||| ||  || ||| |||||| |||||||||| ||||||| ||| |||||||||||||||||||||||    
T  39199439 cttgcgagcttcatcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgcaat 39199538  T
Q  187 ctcttctcttc 197  Q
    || ||||||||    
T  39199539 cttttctcttc 39199549  T

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Target: chr2; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 39450584 - 39450503
Alignment:
Q  117 actaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 198  Q
    ||||| || ||||||| |||||| |||||||||| |||| |||||||||||| |||| ||||||||||||||||| ||||||    
T  39450584 actaacttgctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttct 39450503  T

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Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 39382217 - 39382281
Alignment:
Q  134 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 198  Q
    |||||| |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  39382217 tattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttct 39382281  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 39399043 - 39399081
Alignment:
Q  160 tcaatatctctctttatggactgcaatctcttctcttct 198  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39399043 tcaatatctctctttatggactgcaatctcttctcttct 39399081  T

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Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 39479182 - 39479224
Alignment:
Q  154 cactcctcaatatctctctttatggactgcaatctcttctctt 196  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  39479182 cactcttcaatatctctctttatggactgcaatctcttctctt 39479224  T

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Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 39391653 - 39391726
Alignment:
Q  117 actaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 190  Q
    ||||| || ||| ||| ||| ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  39391653 actaacttgcttgttcttatcttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 2361001 - 2360942
Alignment:
Q  113 catcactaatttcctttttcatattttcaagctctttggagcactcctcaatatctctct 172  Q
    ||||||||  || ||||||| |||||  ||||||||||||||||||||||||||||||||    
T  2361001 catcactagcttgctttttcttatttagaagctctttggagcactcctcaatatctctct 2360942  T

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Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 44623689 - 44623618
Alignment:
Q  132 catattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||| ||| |||||| | |||||||| ||||    
T  44623689 catattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttctacttg 44623618  T

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Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 44896531 - 44896577
Alignment:
Q  355 ggtaacacctttgatttcttaacagaagtgttcaaggaacttctgtt 401  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  44896531 ggtaacacctttgatttcttaacagaattgtgcaaggaatttctgtt 44896577  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 44896356 - 44896418
Alignment:
Q  141 aagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    ||||||||||  ||||||||| ||||||||||| |||||||||| | ||| ||||||| ||||    
T  44896356 aagctctttgtcgcactcctcgatatctctcttgatggactgcagtatctcctcttctacttg 44896418  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 39466992 - 39466956
Alignment:
Q  359 acacctttgatttcttaacagaagtgttcaaggaact 395  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  39466992 acaccttggatttcttaacagaaatgttcaaggaact 39466956  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 44614541 - 44614489
Alignment:
Q  134 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaat 186  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||    
T  44614541 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaat 44614489  T

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Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 19806805 - 19806641
Alignment:
Q  39 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattt 138  Q
    ||||||| ||||||||||||||||||  | | ||| |||||| ||||||||| ||||||  |||||||| ||| ||| |||||||||||||||| |||||    
T  19806805 ctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttattt 19806706  T
Q  139 tcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttcttg 203  Q
    ||||| |||| | |||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  19806705 tcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttg 19806641  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 16112466 - 16112425
Alignment:
Q  160 tcaatatctctctttatggactgcaatctcttctcttcttct 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  16112466 tcaatatctctctttatggactgcaatttcttctcttcttct 16112425  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 44951527 - 44951587
Alignment:
Q  349 tcatacggtaacacctttgatttcttaacagaagtgttcaaggaacttctgttatcaaata 409  Q
    ||||| ||| ||| ||||||||||||||||||| || |||||||| | |||||||||||||    
T  44951527 tcatatggtgacatctttgatttcttaacagaaatgatcaaggaattgctgttatcaaata 44951587  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 33559687 - 33559635
Alignment:
Q  138 ttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 190  Q
    ||||||||||||| ||||||| ||||||||| ||||||  |||||||||||||    
T  33559687 ttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 33559635  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 17058909 - 17058845
Alignment:
Q  134 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 198  Q
    |||||| |||||| | | ||||||  ||||||||||||||||| |||||||||| ||| ||||||    
T  17058909 tatttttaagctcatagtagcacttatcaatatctctctttatagactgcaatcgcttttcttct 17058845  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 33151047 - 33151002
Alignment:
Q  141 aagctctttggagcactcctcaatatctctctttatggactgcaat 186  Q
    ||||||||||||||||| |||||||||||||| || ||| ||||||    
T  33151047 aagctctttggagcactgctcaatatctctctctagggagtgcaat 33151002  T

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