View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7297_low_4 (Length: 467)

Name: NF7297_low_4
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7297_low_4
NF7297_low_4
[»] chr5 (3 HSPs)
chr5 (16-316)||(35057373-35057672)
chr5 (316-450)||(35057213-35057347)
chr5 (16-306)||(43017501-43017795)
[»] chr7 (1 HSPs)
chr7 (80-137)||(38569754-38569811)
[»] chr6 (2 HSPs)
chr6 (206-290)||(14328983-14329066)
chr6 (206-290)||(14421993-14422076)
[»] chr3 (1 HSPs)
chr3 (250-286)||(8253278-8253314)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 35057672 - 35057373
Alignment:
Q  16 atgaaatattatatctggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaa 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35057672 atgaaatattatatctggaattatagcacaaagtt-ctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaa 35057574  T
Q  116 attaacgccatccaaaaatgaagtttcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaagc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  35057573 attaacgccatccaaaaatgaagtttcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaagc 35057474  T
Q  216 tgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacacacagggtacc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||    
T  35057473 tgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtatatggaaaacacacggagtacc 35057374  T

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Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 316 - 450
Target Start/End: Complemental strand, 35057347 - 35057213
Alignment:
Q  316 gagtgtacagtagaagttcccaatttctaaaccttcctttacttttgtcacctgcttgtgcctataaaaatgatataagcaacacactccaagcagataa 415  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35057347 gagtgtacggtagaagttcccaatttctaaaccttcctttacttttgtcacctgcttgtgcctataaaaatgatataagcagcacactccaagcagataa 35057248  T
Q  416 aatagatacacccacatcaaacaagaaaaccattt 450  Q
    |||||||||||||||||||||||||||||||||||    
T  35057247 aatagatacacccacatcaaacaagaaaaccattt 35057213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 43017795 - 43017501
Alignment:
Q  16 atgaaatattatatctggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaa 115  Q
    |||||||||| | | ||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  43017795 atgaaatattctgtttggaattatagcacaaagtta-tgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa 43017697  T
Q  116 attaacgccatccaaaaatgaagtt-----------------tcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaa 198  Q
     | || || |||||||||| |  ||                 ||||||||||||| | ||||||||||       ||||| |||||||| ||||||||||    
T  43017696 -tcaaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaa 43017598  T
Q  199 gtgactctttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatgg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           |||||||||||||||||||||||||| |||     
T  43017597 gtgactctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatat-----------gtgactcattcaaaagctgaattgtgcatgc 43017509  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 38569811 - 38569754
Alignment:
Q  80 attttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaa 137  Q
    |||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||    
T  38569811 attttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaatgaa 38569754  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 14328983 - 14329066
Alignment:
Q  206 tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt 290  Q
    |||||||| ||||||||| ||  ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  14328983 tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt 14329066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 14421993 - 14422076
Alignment:
Q  206 tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt 290  Q
    |||||||| ||||||||| ||  ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  14421993 tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt 14422076  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 8253278 - 8253314
Alignment:
Q  250 cctatatttatgctttgagtgactcattcaaaagctg 286  Q
    ||||||||||||||||||||  |||||||||||||||    
T  8253278 cctatatttatgctttgagtagctcattcaaaagctg 8253314  T

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