View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7297_low_5 (Length: 452)

Name: NF7297_low_5
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7297_low_5
NF7297_low_5
[»] chr2 (15 HSPs)
chr2 (19-443)||(42774936-42775362)
chr2 (348-426)||(7629751-7629829)
chr2 (378-426)||(40582668-40582716)
chr2 (383-421)||(37420320-37420358)
chr2 (383-427)||(15928551-15928595)
chr2 (381-421)||(37649597-37649637)
chr2 (378-421)||(1976988-1977031)
chr2 (378-421)||(16013834-16013877)
chr2 (382-421)||(43717265-43717304)
chr2 (377-415)||(29183089-29183127)
chr2 (378-428)||(44439169-44439219)
chr2 (383-432)||(33502961-33503010)
chr2 (384-421)||(37561632-37561669)
chr2 (380-432)||(9943344-9943396)
chr2 (381-413)||(16519368-16519400)
[»] chr7 (7 HSPs)
chr7 (379-433)||(45004905-45004959)
chr7 (383-432)||(12306658-12306707)
chr7 (378-426)||(38123766-38123814)
chr7 (378-432)||(15050211-15050265)
chr7 (386-431)||(41788245-41788290)
chr7 (382-418)||(883377-883413)
chr7 (382-418)||(1242706-1242742)
[»] chr3 (16 HSPs)
chr3 (351-421)||(3845235-3845305)
chr3 (348-432)||(52925723-52925807)
chr3 (379-432)||(7262818-7262871)
chr3 (378-422)||(34867308-34867352)
chr3 (350-418)||(51285450-51285518)
chr3 (382-429)||(1290704-1290751)
chr3 (351-426)||(1441499-1441574)
chr3 (350-421)||(40339076-40339147)
chr3 (381-431)||(3776461-3776511)
chr3 (381-414)||(213284-213317)
chr3 (360-421)||(21007764-21007825)
chr3 (382-426)||(7717491-7717535)
chr3 (348-432)||(35264523-35264607)
chr3 (383-431)||(38332650-38332698)
chr3 (381-421)||(39256597-39256637)
chr3 (381-421)||(48089820-48089860)
[»] chr8 (7 HSPs)
chr8 (349-421)||(32767273-32767345)
chr8 (381-421)||(11038104-11038144)
chr8 (378-421)||(41614763-41614806)
chr8 (350-421)||(35495151-35495222)
chr8 (383-421)||(8252721-8252759)
chr8 (381-431)||(39648258-39648308)
chr8 (381-421)||(8027708-8027748)
[»] chr1 (6 HSPs)
chr1 (367-426)||(8381892-8381951)
chr1 (385-432)||(37131860-37131907)
chr1 (351-432)||(15478113-15478194)
chr1 (385-431)||(24587835-24587881)
chr1 (384-431)||(6041617-6041664)
chr1 (352-412)||(8130851-8130911)
[»] chr6 (14 HSPs)
chr6 (378-432)||(33136595-33136649)
chr6 (350-421)||(29240575-29240646)
chr6 (353-427)||(31812203-31812277)
chr6 (380-426)||(34620807-34620853)
chr6 (380-426)||(34748244-34748290)
chr6 (380-432)||(33997119-33997171)
chr6 (378-432)||(33141819-33141873)
chr6 (381-418)||(7262993-7263030)
chr6 (381-426)||(10400814-10400859)
chr6 (382-427)||(26550442-26550487)
chr6 (381-418)||(28533375-28533412)
chr6 (389-430)||(31305964-31306005)
chr6 (381-421)||(9604437-9604477)
chr6 (386-426)||(34063259-34063299)
[»] chr4 (11 HSPs)
chr4 (350-427)||(49138952-49139029)
chr4 (382-421)||(55085125-55085164)
chr4 (382-419)||(50358139-50358176)
chr4 (381-432)||(20712572-20712623)
chr4 (378-417)||(32100217-32100256)
chr4 (379-418)||(35995148-35995187)
chr4 (378-433)||(45329765-45329820)
chr4 (351-425)||(33843583-33843657)
chr4 (380-421)||(2635084-2635125)
chr4 (348-421)||(29904121-29904194)
chr4 (381-429)||(16551879-16551927)
[»] scaffold0168 (1 HSPs)
scaffold0168 (351-427)||(31718-31794)
[»] chr5 (10 HSPs)
chr5 (381-421)||(3043127-3043167)
chr5 (352-420)||(15368136-15368204)
chr5 (383-427)||(39097188-39097232)
chr5 (381-432)||(10898644-10898695)
chr5 (382-421)||(14670941-14670980)
chr5 (381-432)||(29922816-29922867)
chr5 (378-443)||(28973777-28973841)
chr5 (384-421)||(39514824-39514861)
chr5 (381-421)||(24306220-24306260)
chr5 (381-421)||(24367056-24367096)
[»] scaffold0361 (1 HSPs)
scaffold0361 (346-415)||(14242-14311)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 42775362 - 42774936
Alignment:
Q  19 ggtacaccgcacaataatgcctccctagctccagcaacaacccccgagtagaacctggagcattttaaggcatggcataaacacaaatctctataacaag 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42775362 ggtacaccgcataataatgcctccctagctccagcaacaacccccgagtagaacctggagcattttaaggcatggcataaacacaaatctctataacaag 42775263  T
Q  119 gctgcaaattctggacaatagatacaaatcttgaaacaaatcaatacatag--tattgcaagacagaaaatggaaaatgtgtttaagtctaatttcagaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  42775262 gctgcaaattctggacaatagatacaaatcttgaaacaaatcaatacatagagtattacaagacagaaaatggaaaatgtgttgaagtctaatttcagaa 42775163  T
Q  217 ctcagatttatataacttctccctaaccataagttagtaacttacatgtgatgaccgcagcttgatccccgattaatcccactaataacctgaaattcaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42775162 ctcagatttatataacttctccctaaccataagttagtaacttacatgtgatgaccgcagcttgatccccgattaatcccactaataacctgaaattcaa 42775063  T
Q  317 atcacatcattattactatatcacagcactgttagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgac 416  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42775062 atcacatcattattactatatcaaagcactgttagtgtatgtgtggtttaacttctagggtagccaaaattgattctagaggtatagaattgattttgac 42774963  T
Q  417 atgttcggttgctctcttgagtataat 443  Q
    |||||| ||||||||||||||||||||    
T  42774962 atgttccgttgctctcttgagtataat 42774936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 7629751 - 7629829
Alignment:
Q  348 ttagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    ||||||||||| |||||  |||| ||| | |||||| ||||||||||||||| |||||||||||||| |||||| ||||    
T  7629751 ttagtgtatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgtttggtt 7629829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 40582668 - 40582716
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  40582668 agccaaaattgattctagaggtgtagaattgattttaacatgtttggtt 40582716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 37420358 - 37420320
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  37420358 aaattgattctagaggtgtagaattgattttgacatgtt 37420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 15928595 - 15928551
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgttcggttg 427  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttg 15928551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 37649637 - 37649597
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  37649637 caaaattgattcttgaggtatggaattgattttgacatgtt 37649597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 1977031 - 1976988
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||||||||||||||| |  ||||||||||||||||||    
T  1977031 agccaaaattgattctagaggtttgaaattgattttgacatgtt 1976988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 16013877 - 16013834
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||| ||||||||||| ||||||||||||| |||||||    
T  16013877 agccaaaatttattctagaggtgtagaattgattttaacatgtt 16013834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 43717265 - 43717304
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  43717265 aaaattgattctagatgtgtagaattgattttgacatgtt 43717304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 29183127 - 29183089
Alignment:
Q  377 tagccaaaattgattctagaggtatagaattgattttga 415  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29183127 tagccaaaattgattttagatgtatagaattgattttga 29183089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 44439169 - 44439219
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggttgc 428  Q
    ||||||||||||||||| |||| | ||||| ||||||||||||| ||||||    
T  44439169 agccaaaattgattctaaaggtgttgaattaattttgacatgtttggttgc 44439219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 33503010 - 33502961
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||||||  |||| || |||||||||||||||||| ||||||||||    
T  33503010 aaattgattctgaaggtgtaaaattgattttgacatgtttggttgctctc 33502961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 37561632 - 37561669
Alignment:
Q  384 aattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||||||||| || ||||||||||||||||||    
T  37561632 aattgattctagaggtgtaaaattgattttgacatgtt 37561669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 9943344 - 9943396
Alignment:
Q  380 ccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||||||  |||| || |||||||||| ||||||| ||||||||||    
T  9943344 ccaaaattgattctgaaggtgtaaaattgattttaacatgtttggttgctctc 9943396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 16519368 - 16519400
Alignment:
Q  381 caaaattgattctagaggtatagaattgatttt 413  Q
    ||||||||||||||||||| |||||||||||||    
T  16519368 caaaattgattctagaggtgtagaattgatttt 16519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 45004905 - 45004959
Alignment:
Q  379 gccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctct 433  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  45004905 gccaaaattgattctagaggtgtagaattgattttgacatgtttggttactctct 45004959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 12306658 - 12306707
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||| ||| |||||||| ||||||||||||||||||||| ||||||||||    
T  12306658 aaatggatcctagaggtgtagaattgattttgacatgtttggttgctctc 12306707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 38123814 - 38123766
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    |||||||||||||||||||| | ||||||||||||| ||||||| ||||    
T  38123814 agccaaaattgattctagagatgtagaattgattttaacatgtttggtt 38123766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 15050211 - 15050265
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||| |||| |||||    
T  15050211 agccaaaattgattctagaagtgaagaattgattttgacctgtttggttactctc 15050265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 41788245 - 41788290
Alignment:
Q  386 ttgattctagaggtatagaattgattttgacatgttcggttgctct 431  Q
    |||||||||||  |||||||||||||||| |||||| |||||||||    
T  41788245 ttgattctagaaatatagaattgattttggcatgtttggttgctct 41788290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 883377 - 883413
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacat 418  Q
    |||||||||||||||||| |||| |||||||||||||    
T  883377 aaaattgattctagaggtgtagagttgattttgacat 883413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 1242706 - 1242742
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacat 418  Q
    |||||||||||||||||| |||| |||||||||||||    
T  1242706 aaaattgattctagaggtgtagagttgattttgacat 1242742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 3845305 - 3845235
Alignment:
Q  351 gtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||| |||||  |||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtt 3845235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 52925807 - 52925723
Alignment:
Q  348 ttagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||||||  ||||  |||| ||| | || ||||||||||||||||||| || |||||||||||||||||| ||||||||||    
T  52925807 ttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttggttgctctc 52925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 7262818 - 7262871
Alignment:
Q  379 gccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||||| |||||||  |||||||||| ||||||||| ||||||||||    
T  7262818 gccaaaattgattttagaggtgaagaattgattctgacatgtttggttgctctc 7262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 34867352 - 34867308
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttc 422  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||    
T  34867352 agccgaaattgattctacaggtgtagaattgattttgacatgttc 34867308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 51285450 - 51285518
Alignment:
Q  350 agtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacat 418  Q
    ||||||||| |||||  |||| | | |||||| ||||| ||||||||||| ||||||||||||||||||    
T  51285450 agtgtatgtttggttccactttttgagtagccgaaattaattctagaggtgtagaattgattttgacat 51285518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 1290704 - 1290751
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatgttcggttgct 429  Q
    |||||||||||||||||| |||||||||||||||  |||| |||||||    
T  1290704 aaaattgattctagaggtgtagaattgattttgatttgtttggttgct 1290751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 426
Target Start/End: Complemental strand, 1441574 - 1441499
Alignment:
Q  351 gtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    |||||||| |||||  |||| ||| ||| ||||||||  |||||||||| ||||||||| ||||||||||| ||||    
T  1441574 gtgtatgtttggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtt 1441499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 40339076 - 40339147
Alignment:
Q  350 agtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||| ||||||||||| |||    ||||||||||||| ||||||  || ||||||||||||||||||    
T  40339076 agtgtatgtttggtttaacttttggaagggccaaaattgattttagaggagtataattgattttgacatgtt 40339147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 431
Target Start/End: Original strand, 3776461 - 3776511
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggttgctct 431  Q
    |||||||| || ||||||| ||||||||||||||||||||| |||| ||||    
T  3776461 caaaattggttatagaggtgtagaattgattttgacatgtttggttcctct 3776511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 213284 - 213317
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttg 414  Q
    |||||||||||||||||||| |||||||||||||    
T  213284 caaaattgattctagaggtagagaattgattttg 213317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 21007825 - 21007764
Alignment:
Q  360 tggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||| |||| ||| | |||||||||||||| || || |||| ||||||||||||||||||    
T  21007825 tggtttcacttttggaggagccaaaattgattttaaagatatataattgattttgacatgtt 21007764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 7717535 - 7717491
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||||    
T  7717535 aaaattgattgtagaggtttagagttgattttgacatgtttggtt 7717491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 35264607 - 35264523
Alignment:
Q  348 ttagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||| |||||| | |||| | || | ||||||| ||||||||||  || |||||||| | ||||||| ||||||||||    
T  35264607 ttagtgtatgtttggtttcatttctagagtggtcaaaatttattctagaggagtaaaattgattctcacatgtttggttgctctc 35264523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 38332698 - 38332650
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgttcggttgctct 431  Q
    |||||||||||||| || || |||||||||||||||||| ||| |||||    
T  38332698 aaattgattctagatgtgtataattgattttgacatgtttggtggctct 38332650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 39256597 - 39256637
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  39256597 caaaattagttctagaggtgtagaattgattttgacatgtt 39256637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 48089860 - 48089820
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||| ||||||||||||||||| |||||| ||||||||    
T  48089860 caaaatttattctagaggtatagaactgatttagacatgtt 48089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 32767273 - 32767345
Alignment:
Q  349 tagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||| |||| | || | ||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  32767273 tagtgtatgtttggtgtcacgtttgggagagccaaaattgattctagagatatagaattgattttgacatgtt 32767345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 11038104 - 11038144
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  11038104 caaaattgattctagaggtatataattgattttgacatgtt 11038144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 41614763 - 41614806
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  41614763 agccaaaattgattctagaggtataaaattgattttgacttgtt 41614806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 35495151 - 35495222
Alignment:
Q  350 agtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||| |||||  |||| ||| | | ||||||||||||||| | || |||||||||||||||||||||    
T  35495151 agtgtatgtttggttccacttttggagcacccaaaattgattctacaagtgtagaattgattttgacatgtt 35495222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 8252721 - 8252759
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  8252721 aaattgattctagaggtgtagaactgattttgacatgtt 8252759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 39648308 - 39648258
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggttgctct 431  Q
    ||||||||||||||||| | || |||||||||||||||||| |||| ||||    
T  39648308 caaaattgattctagagatgtataattgattttgacatgtttggtttctct 39648258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 8027708 - 8027748
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  8027708 caaaattgattatagagatatagaattgattttgaaatgtt 8027748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 426
Target Start/End: Original strand, 8381892 - 8381951
Alignment:
Q  367 acttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    |||||||| | || |||||||||||||||||||||| |||||||||||||||||| ||||    
T  8381892 acttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttggtt 8381951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 432
Target Start/End: Original strand, 37131860 - 37131907
Alignment:
Q  385 attgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  37131860 attgattctagaggtatagaattgattttggcatgtttggttgctctc 37131907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 15478194 - 15478113
Alignment:
Q  351 gtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||| |||||  |||| ||| | ||||||| |||||| ||| ||| ||||||||||||||||||||| ||||||||||    
T  15478194 gtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttggttgctctc 15478113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 24587835 - 24587881
Alignment:
Q  385 attgattctagaggtatagaattgattttgacatgttcggttgctct 431  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  24587835 attgattctagaggtgtagaattgattgtgacatgtttggttgctct 24587881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 6041617 - 6041664
Alignment:
Q  384 aattgattctagaggtatagaattgattttgacatgttcggttgctct 431  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||||    
T  6041617 aattgattctagaggtgtaaaattgattttgatatgtttggttgctct 6041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 8130851 - 8130911
Alignment:
Q  352 tgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattt 412  Q
    ||||||| |||||  |||||||| | ||||||||||||||||| | || ||||||||||||    
T  8130851 tgtatgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgattt 8130911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 33136649 - 33136595
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||||| ||||||||||| || |||||||||||||||||| ||||||||||    
T  33136649 agccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctc 33136595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 29240646 - 29240575
Alignment:
Q  350 agtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||| |||||  |||| ||||| |  ||||||||||||||||||| || ||||||||||||||||||    
T  29240646 agtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgtt 29240575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 31812203 - 31812277
Alignment:
Q  353 gtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggttg 427  Q
    |||||| |||||| |||| ||| |||  ||||||| ||| ||||||| ||||||||||||||||||||| |||||    
T  31812203 gtatgtttggtttcacttttggagtaagcaaaattcattatagaggtctagaattgattttgacatgtttggttg 31812277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 34620807 - 34620853
Alignment:
Q  380 ccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  34620807 ccaaaattgattctaaaggtgtagaattgattttgacatgtttggtt 34620853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 34748244 - 34748290
Alignment:
Q  380 ccaaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  34748244 ccaaaattgattctaaaggtgtagaattgattttgacatgtttggtt 34748290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 33997119 - 33997171
Alignment:
Q  380 ccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||||||||||||| | |||||| |||||||||||||| |||| |||||    
T  33997119 ccaaaattgattctagagatttagaatcgattttgacatgtttggtttctctc 33997171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 33141873 - 33141819
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||||||||||  || || |||||||||||| ||||| ||||||||||    
T  33141873 agccaaaattgattctagcagtgtaaaattgattttgatatgtttggttgctctc 33141819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 7262993 - 7263030
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacat 418  Q
    |||||||||||||||| || ||||||||||||||||||    
T  7262993 caaaattgattctagaagtgtagaattgattttgacat 7263030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 10400859 - 10400814
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    ||||||||||||||||||| || |||||||||||| ||||| ||||    
T  10400859 caaaattgattctagaggtgtataattgattttgatatgtttggtt 10400814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 26550442 - 26550487
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatgttcggttg 427  Q
    |||| ||||| ||||||| ||||||||||||||||||||| |||||    
T  26550442 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 26550487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 28533375 - 28533412
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacat 418  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  28533375 caaaattgattccagaggtatagaattgattttaacat 28533412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 31306005 - 31305964
Alignment:
Q  389 attctagaggtatagaattgattttgacatgttcggttgctc 430  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  31306005 attctagatgtgtagaattgattttgacatgtttggttgctc 31305964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 9604437 - 9604477
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  9604437 caaaattgattctagacgtatagaatttattttaacatgtt 9604477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 34063259 - 34063299
Alignment:
Q  386 ttgattctagaggtatagaattgattttgacatgttcggtt 426  Q
    ||||||||| |||| ||||||||||||||||||||| ||||    
T  34063259 ttgattctacaggtgtagaattgattttgacatgtttggtt 34063299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 49139029 - 49138952
Alignment:
Q  350 agtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggttg 427  Q
    ||||||||| |||||  ||||||   || ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  49139029 agtgtatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctgacatgtttggttg 49138952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 55085164 - 55085125
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  55085164 aaaattgattctagaggtatagaattgattttaacatgtt 55085125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 50358176 - 50358139
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatg 419  Q
    |||||||||||||||||| |||||||||||||||||||    
T  50358176 aaaattgattctagaggtgtagaattgattttgacatg 50358139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 20712572 - 20712623
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||||||||||| ||||||||||||| ||||| | | ||||||||    
T  20712572 caaaattgattctagaggtttagaattgatttttacatgcttgtttgctctc 20712623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Original strand, 32100217 - 32100256
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgaca 417  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  32100217 agccaaaattaattctagaggtattgaattgattttgaca 32100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 35995148 - 35995187
Alignment:
Q  379 gccaaaattgattctagaggtatagaattgattttgacat 418  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  35995148 gccaaaattgattctagagttgtagaattgattttgacat 35995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 45329765 - 45329820
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctct 433  Q
    |||||||||||||| ||||||| || |||||| ||| ||||||| |||||||||||    
T  45329765 agccaaaattgattatagaggtgtaaaattgactttaacatgtttggttgctctct 45329820  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 33843583 - 33843657
Alignment:
Q  351 gtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggt 425  Q
    |||||||| |||||| |||||| | |   |||||||||||||||||||| ||||||| ||| ||| |||||||||    
T  33843583 gtgtatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctgaaatgttcggt 33843657  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 2635084 - 2635125
Alignment:
Q  380 ccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||||||| || || ||||||||||||||||||    
T  2635084 ccaaaattgattctagaagtgtaaaattgattttgacatgtt 2635125  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 29904121 - 29904194
Alignment:
Q  348 ttagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||| |||||| |||||| | | | ||| |||||||||||||| |||| |||||||| | |||||||    
T  29904121 ttagtgtatgtttggtttcacttctagaggatccacaattgattctagagatataaaattgattctaacatgtt 29904194  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 16551879 - 16551927
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggttgct 429  Q
    ||||||||||| ||||||| ||||||||||| ||||||||  |||||||    
T  16551879 caaaattgattttagaggtgtagaattgattctgacatgtatggttgct 16551927  T

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Target: scaffold0168 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 31718 - 31794
Alignment:
Q  351 gtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgttcggttg 427  Q
    |||||||| |||||  |||||| | ||  |||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  31718 gtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttg 31794  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 3043167 - 3043127
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  3043167 caaaattgattctagaggtgtagaattgattttgacatgtt 3043127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 15368136 - 15368204
Alignment:
Q  352 tgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttgacatgt 420  Q
    ||||||| |||||  |||| ||| | |||||||||||||||||||  | ||||||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgt 15368204  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 39097188 - 39097232
Alignment:
Q  383 aaattgattctagaggtatagaattgattttgacatgttcggttg 427  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttg 39097232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 10898644 - 10898695
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    ||||||||||||||||| | | ||||| ||||||||||||| ||||||||||    
T  10898644 caaaattgattctagagctgtcgaattaattttgacatgtttggttgctctc 10898695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 14670941 - 14670980
Alignment:
Q  382 aaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  14670941 aaaattgattcaagaggtatagaattgattttaacatgtt 14670980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 29922816 - 29922867
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgttcggttgctctc 432  Q
    |||||||||||||||  || ||||||||||||||||||||| ||||| ||||    
T  29922816 caaaattgattctagtagtgtagaattgattttgacatgtttggttgttctc 29922867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 28973777 - 28973841
Alignment:
Q  378 agccaaaattgattctagaggtatagaattgattttgacatgttcggttgctctcttgagtataat 443  Q
    |||| |||||||||||||| || ||||||||||||||| ||||| || |||| || ||||||||||    
T  28973777 agcctaaattgattctagatgtgtagaattgattttgatatgtttggatgctatc-tgagtataat 28973841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 39514824 - 39514861
Alignment:
Q  384 aattgattctagaggtatagaattgattttgacatgtt 421  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  39514824 aattgattctagaggtgtagaattgattttgacttgtt 39514861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 24306260 - 24306220
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||| |||||||| ||||||||| ||||||||    
T  24306260 caaaattgattctggaggtatataattgatttggacatgtt 24306220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 24367056 - 24367096
Alignment:
Q  381 caaaattgattctagaggtatagaattgattttgacatgtt 421  Q
    ||||||||||||| |||||||| ||||||||| ||||||||    
T  24367056 caaaattgattctggaggtatataattgatttggacatgtt 24367096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 14311 - 14242
Alignment:
Q  346 tgttagtgtatgtgtggtttaacttctggggtagccaaaattgattctagaggtatagaattgattttga 415  Q
    ||||||||||||| |||||  |||| |||   |||||||||||| |||||| || |||||||||||||||    
T  14311 tgttagtgtatgtttggttccacttttggaagagccaaaattgaatctagatgtgtagaattgattttga 14242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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