View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7297_low_8 (Length: 432)
Name: NF7297_low_8
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7297_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 30810189 - 30810469
Alignment:
| Q |
22 |
atgcggaactttaaatcttacgccggcgaacaacgcgttggtccctttcataaggtttgatttagattcttccattttttgaattcaattggtttaattg |
121 |
Q |
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| T |
30810189 |
atgcggaactttaaatcttacgccggcgaacaacgcgttggtccctttcataaggtttgatttagattcttccattttttgaattcaattggtttaattg |
30810288 |
T |
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| Q |
122 |
gttcaattttacttgtgaagttaaaatttggtgaaattttggtttcagagtttttcggctgtggttggaccgaatggaagtgggaagagtaatgttattg |
221 |
Q |
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| T |
30810289 |
gttcaattttacttg--aagttaaaatttggtgaaattttggtttcagagtttttcggctgtggttggaccgaatggaagtgggaagagtaatgttattg |
30810386 |
T |
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| Q |
222 |
atgctatgttgtttgtgtttggaaaacgagccaagcaggtgcgtttttgagaatattctagaaagtaattcgtgcttggaaag |
304 |
Q |
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| T |
30810387 |
atgctatgttgtttgtgtttggaaaacgagccaagcaggtgcgtttttgagaatattctagaaagtaattcgtgcttggaaag |
30810469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 30810504 - 30810610
Alignment:
| Q |
315 |
gtttaattgggaacttgtggttgcagatgagattgaataaagtttcggagcttatacataattctagcaatcatcagaatttggatagtgctggggtttc |
414 |
Q |
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| T |
30810504 |
gtttaattgggaacttgtggttgcagatgagattgaataaagtttcggagcttatacataattctagcaatcatcagaatttggatagtgctggggtttc |
30810603 |
T |
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| Q |
415 |
tgttcat |
421 |
Q |
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| T |
30810604 |
tgttcat |
30810610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 36130218 - 36130327
Alignment:
| Q |
134 |
ttgtgaagttaaaatttggtgaaattttggtttcagagtttttcggctgtggttggaccgaatggaagtgggaagagtaatgttattgatgctatgttgt |
233 |
Q |
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| T |
36130218 |
ttgtgaagttgaaattttggtaagtttttgttgcagagtttttcggctgtggttggacccaatggaagtggaaagagtaatgtgattgatgccatgttgt |
36130317 |
T |
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| Q |
234 |
ttgtgtttgg |
243 |
Q |
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|||| ||||| |
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| T |
36130318 |
ttgtatttgg |
36130327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 36130417 - 36130500
Alignment:
| Q |
335 |
ttgcagatgagattgaataaagtttcggagcttatacataattctagcaatcatcagaatttggatagtgctggggtttctgtt |
418 |
Q |
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| T |
36130417 |
ttgcagaggcgattgaacaaagtttcggagcttatacacaattctaccgatcaccacaatttggatagtgctgaggtttctgtt |
36130500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 36130124 - 36130201
Alignment:
| Q |
22 |
atgcggaactttaaatcttacgccggcgaacaacgcgttggtccctttcataaggtt-tgatttagattcttccattt |
98 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||| | | || ||||||||||||| |
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| T |
36130124 |
atgcggaacttcaaatcttacgctggcgaacaacgcgttggcccatttcataaggttattaattggattcttccattt |
36130201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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