View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7297_low_9 (Length: 416)

Name: NF7297_low_9
Description: NF7297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7297_low_9
NF7297_low_9
[»] chr7 (9 HSPs)
chr7 (204-398)||(33416476-33416670)
chr7 (18-177)||(33416290-33416449)
chr7 (18-177)||(33410441-33410600)
chr7 (18-177)||(33424343-33424502)
chr7 (224-398)||(33424566-33424741)
chr7 (21-177)||(33428087-33428243)
chr7 (224-398)||(33410664-33410826)
chr7 (19-146)||(33436496-33436623)
chr7 (274-379)||(33427873-33427978)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-120)||(5180-5281)
[»] chr1 (4 HSPs)
chr1 (31-159)||(24985049-24985177)
chr1 (31-159)||(24990879-24991007)
chr1 (326-398)||(24984780-24984852)
chr1 (326-398)||(24990610-24990682)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 204 - 398
Target Start/End: Original strand, 33416476 - 33416670
Alignment:
Q  204 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416476 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 33416575  T
Q  304 acatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33416576 acatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccattgagtgtaatcaaaatcaacggtccaacc 33416670  T

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Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 33416290 - 33416449
Alignment:
Q  18 gtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtg 117  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416290 gtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtg 33416389  T
Q  118 cagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416390 cagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 33416449  T

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Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 33410441 - 33410600
Alignment:
Q  18 gtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtg 117  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  33410441 gtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtg 33410540  T
Q  118 cagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 177  Q
    ||||| || |||||||||||||| ||||| ||||||||||||||||  || |||||||||    
T  33410541 cagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttg 33410600  T

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Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 33424343 - 33424502
Alignment:
Q  18 gtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtg 117  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  33424343 gtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtg 33424442  T
Q  118 cagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 177  Q
    ||||| || |||||||||||||| ||||| ||||||||||||||||  || |||||||||    
T  33424443 cagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttg 33424502  T

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Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 398
Target Start/End: Original strand, 33424566 - 33424741
Alignment:
Q  224 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttattttttcc-tttt 322  Q
    |||||||||||||||||  || | || |||||| |||||| ||| |||| ||| ||||||||||||||||||||||||| | |||| |||||||| ||||    
T  33424566 acaaaagttaattataatcataatatgcactaactagttatgcagttgattataaactaaataaacttgaaaccaaatgaaaatttgttttttccctttt 33424665  T
Q  323 acatacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacc 398  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33424666 acatacctaagttgtctccaacacggaaaactttgtcttgagcccattgagtgtaatcaaaatcaacggtccaacc 33424741  T

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Target: chr7; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 33428243 - 33428087
Alignment:
Q  21 atcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcag 120  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||     
T  33428243 atcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcat 33428144  T
Q  121 ctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 177  Q
    ||||| |||| |||||| |||||||| ||||||||||| ||||||||||||||||||    
T  33428143 ctctgaaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagttg 33428087  T

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Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 224 - 398
Target Start/End: Original strand, 33410664 - 33410826
Alignment:
Q  224 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttattttttcctttta 323  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||               |||||||||| |||| |||||||||||||    
T  33410664 acaaaagttaattataattatgagatacactaattagttaaacaattgaatatgaa---------------accaaatggatatttgttttttcctttta 33410748  T
Q  324 ---catacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacc 398  Q
       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410749 ttacatacctagattgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacc 33410826  T

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Target: chr7; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 33436496 - 33436623
Alignment:
Q  19 tgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgc 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  33436496 tgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaagtgc 33436595  T
Q  119 agctctggaagagtgtgccattcacttt 146  Q
    ||  ||  || ||||| |||||||||||    
T  33436596 agtccttaaaaagtgtaccattcacttt 33436623  T

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Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 33427978 - 33427873
Alignment:
Q  274 tatgaactaaataaacttgaaaccaaatggacatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccactgag 373  Q
    |||||||||||||||||| |||||||||||| | |  | || |||||||||||||| || ||||| ||||||||||||||||||||||  ||||| ||||    
T  33427978 tatgaactaaataaactttaaaccaaatggaaaatcgtattatccttttacataccaagattgtcaccaacacgaaaaactttgtcttacgcccattgag 33427879  T
Q  374 tgtaat 379  Q
    ||||||    
T  33427878 tgtaat 33427873  T

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Target: scaffold0262 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 5281 - 5180
Alignment:
Q  19 tgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5281 tgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgc 5182  T
Q  119 ag 120  Q
    ||    
T  5181 ag 5180  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 24985177 - 24985049
Alignment:
Q  31 ccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaaga 130  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||||||||| |||| || ||||||||||||||| || ||||    
T  24985177 ccacatacataccactttcttccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga 24985078  T
Q  131 gtgtgccattcactttaaaaacattgtgc 159  Q
    || | |||| |||||| || |||||||||    
T  24985077 gtttaccatccactttgaagacattgtgc 24985049  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 24991007 - 24990879
Alignment:
Q  31 ccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaaga 130  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||||||||| |||| || ||||||||||||||| || ||||    
T  24991007 ccacatacataccactttcttccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga 24990908  T
Q  131 gtgtgccattcactttaaaaacattgtgc 159  Q
    || | |||| |||||| || |||||||||    
T  24990907 gtttaccatccactttgaagacattgtgc 24990879  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 24984852 - 24984780
Alignment:
Q  326 tacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacc 398  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |  |||||||||||||||||    
T  24984852 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtgtagttgaaatcaacggtccaacc 24984780  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 24990682 - 24990610
Alignment:
Q  326 tacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacc 398  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |  |||||||||||||||||    
T  24990682 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtgtagttgaaatcaacggtccaacc 24990610  T

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