View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7298_high_7 (Length: 239)
Name: NF7298_high_7
Description: NF7298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7298_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 4425578 - 4425363
Alignment:
| Q |
17 |
aaatagacgacatatatacccttaaagttttaatgttgtcgcatttcaatgtagttgaaaaattgaaagatatatgaaagggaaaaatatnnnnnnnnnn |
116 |
Q |
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| T |
4425578 |
aaatagacgacatatatatccttaaagttttaatgttgtcgcat----atgtagttgaaaaattgaaagatatatgaaagggagaaata---aaaaaaaa |
4425486 |
T |
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| Q |
117 |
ntatactatagttaagaatggaggtagtaataactttcattacaatgtcaccttatgaaattgtctatgaattggagtagatataaaagtagaacacatg |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4425485 |
atattctatagttaagaatggaggtagtaataactttcattacaatgtcactttatgaaattgtctatgaattggagtagatatagaagtagaacacatg |
4425386 |
T |
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| Q |
217 |
catttctatcgatttcttatttc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
4425385 |
catttctatcgatttcttatttc |
4425363 |
T |
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