View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7298_high_8 (Length: 204)
Name: NF7298_high_8
Description: NF7298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7298_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 4923615 - 4923788
Alignment:
| Q |
16 |
caaatttaatacacaaaagattgaaatttaaatttacacaataaatatttattttgtatggaaactttaacatatatcataaggacacatgttagcatga |
115 |
Q |
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| T |
4923615 |
caaatttaatacacaaaagattgaaatttaattttacacaataaatatttattttgtatggaaactttaacatatatcataaggacacatgttagcatga |
4923714 |
T |
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| Q |
116 |
ccatatttttataagttggctgcagataatcttagaagttagactaaatattttgcaggtacgtatggtttcat |
189 |
Q |
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| T |
4923715 |
tcatatttttataagttggctggagataatcttagaagttagactaaatattttgcaggtacgtatggtttcat |
4923788 |
T |
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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 26241388 - 26241296
Alignment:
| Q |
25 |
tacacaaaagattgaaatttaaatttacacaataaatatttattttgtatggaaactttaacatatatcataaggacacatgttagcatgacc |
117 |
Q |
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| T |
26241388 |
tacaaaaaagattgaaatttaattttgcacgataaatatttgctttttgtggaaaccttaacatgtgtcataagggcacatgttagcatgacc |
26241296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 3676044 - 3676117
Alignment:
| Q |
16 |
caaatttaatacacaaaagattgaaatttaaatttacacaataaatattt-attttgtatggaaactttaacat |
88 |
Q |
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| T |
3676044 |
caaatttagttcacaaaagattgaaatttaattttgcacaataaatatttaattttttatgaaaaccttaacat |
3676117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 37968307 - 37968246
Alignment:
| Q |
29 |
caaaagattgaaatttaaatttacacaataaatatttattttgtatggaaactttaacatat |
90 |
Q |
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| T |
37968307 |
caaaagattgaaatttaattttacacaataaatatttgatttttatgaaaaccttaacatat |
37968246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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