View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7298_low_3 (Length: 353)

Name: NF7298_low_3
Description: NF7298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7298_low_3
NF7298_low_3
[»] chr7 (8 HSPs)
chr7 (32-203)||(37526386-37526557)
chr7 (32-198)||(45235010-45235175)
chr7 (59-203)||(40167216-40167362)
chr7 (104-191)||(46767990-46768077)
chr7 (59-197)||(20078729-20078868)
chr7 (32-118)||(25778521-25778607)
chr7 (91-190)||(45358025-45358121)
chr7 (56-116)||(29638911-29638971)
[»] chr2 (8 HSPs)
chr2 (1-141)||(19905475-19905613)
chr2 (171-289)||(19905739-19905857)
chr2 (32-196)||(31938041-31938204)
chr2 (32-202)||(30762788-30762950)
chr2 (229-290)||(38396998-38397059)
chr2 (141-190)||(30827681-30827730)
chr2 (62-153)||(4809540-4809632)
chr2 (32-65)||(36070263-36070296)
[»] chr1 (13 HSPs)
chr1 (32-194)||(527903-528066)
chr1 (32-198)||(40032247-40032413)
chr1 (54-178)||(23930325-23930450)
chr1 (40-198)||(15536237-15536391)
chr1 (44-167)||(18341584-18341707)
chr1 (52-204)||(40205092-40205245)
chr1 (32-155)||(44309553-44309676)
chr1 (73-198)||(47148320-47148445)
chr1 (128-198)||(22545131-22545202)
chr1 (51-167)||(50154081-50154197)
chr1 (57-123)||(34643989-34644055)
chr1 (46-115)||(44317925-44317994)
chr1 (245-285)||(8710903-8710943)
[»] chr5 (12 HSPs)
chr5 (32-198)||(36447594-36447760)
chr5 (32-198)||(12164464-12164632)
chr5 (69-198)||(7719661-7719790)
chr5 (59-155)||(28234659-28234755)
chr5 (36-117)||(14913568-14913649)
chr5 (69-115)||(15405374-15405420)
chr5 (48-118)||(3737103-3737173)
chr5 (230-289)||(29340913-29340972)
chr5 (94-160)||(15405420-15405486)
chr5 (129-197)||(14913958-14914026)
chr5 (48-183)||(36282559-36282694)
chr5 (85-124)||(35607324-35607364)
[»] chr8 (6 HSPs)
chr8 (32-198)||(7243797-7243963)
chr8 (68-198)||(30467145-30467275)
chr8 (32-167)||(38828918-38829052)
chr8 (32-190)||(23690175-23690329)
chr8 (64-190)||(37244873-37244997)
chr8 (69-169)||(3447716-3447816)
[»] chr6 (7 HSPs)
chr6 (32-198)||(24324257-24324417)
chr6 (72-198)||(5330584-5330710)
chr6 (116-198)||(32429516-32429598)
chr6 (32-117)||(32429154-32429241)
chr6 (102-169)||(2158453-2158520)
chr6 (231-289)||(29229025-29229083)
chr6 (84-143)||(6563829-6563888)
[»] chr3 (7 HSPs)
chr3 (72-198)||(54776863-54776989)
chr3 (32-185)||(12907285-12907438)
chr3 (34-198)||(47804048-47804209)
chr3 (144-198)||(12906567-12906621)
chr3 (231-276)||(29586254-29586299)
chr3 (234-287)||(33632743-33632796)
chr3 (69-102)||(54433093-54433126)
[»] chr4 (10 HSPs)
chr4 (32-140)||(5472568-5472676)
chr4 (128-203)||(5472699-5472774)
chr4 (32-159)||(35619377-35619507)
chr4 (82-174)||(23850024-23850116)
chr4 (32-145)||(24294292-24294405)
chr4 (35-167)||(22027126-22027259)
chr4 (71-153)||(38499737-38499819)
chr4 (151-198)||(13073037-13073084)
chr4 (66-177)||(54166679-54166789)
chr4 (64-115)||(52347512-52347563)
[»] scaffold0221 (1 HSPs)
scaffold0221 (32-175)||(6630-6773)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 37526557 - 37526386
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||    
T  37526557 attctctccattgaaaattctctcaaattttctcaagtggaatctcaaccatcaaacataagagagaaaatgagaattaaattataataaaaagtggttg 37526458  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaagtccc 203  Q
    ||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||| ||||||| ||||    
T  37526457 ttgtattttaatggtggagattgaaaatggagaaaacttaaaagaattttcaatggagatgatccaaatccc 37526386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 45235010 - 45235175
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    ||||||| | || |||||||| |||| |||| |||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |||||| ||||    
T  45235010 attctctacgttgaaaattctctcaagttttctcaagtgaaatctcaaccatcaaacataagagagaaaatgagaattaaattttaataaaaagt-gttg 45235108  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    |||||||| |||| ||||||||||||||||||||||||  ||| ||||||||||| ||| |||||||    
T  45235109 ttgtatttcaatgatggagattgaaaatggagaaaacttaagagaattttcaatgaagatgatccaa 45235175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 40167362 - 40167216
Alignment:
Q  59 ttttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaat--tataatgaaaagtagttgttgtattttaatggtggagattgaa 156  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||  |||||  |||||| |||  ||  |||||||| |||||||| ||    
T  40167362 ttttctcaagtgaaatcttaaccattaaatatgagagagaaaatgagagttaaattgtataaaaaaaagtggttaatggcttttaatgatggagattaaa 40167263  T
Q  157 aatggagaaaactcgagaaaattttcaatggagaggatccaagtccc 203  Q
    |||||||||||   ||||||| ||||||||||||| |||||| ||||    
T  40167262 aatggagaaaatctgagaaaaatttcaatggagagaatccaaatccc 40167216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 46767990 - 46768077
Alignment:
Q  104 agaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagag 191  Q
    |||||||||||||||  ||||||  |||||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||    
T  46767990 agaattaaattataaaaaaaagtgcttgttgcattttatttgtggagattgaaaatggagaaaacttgagaaaattttcaatggagag 46768077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 20078868 - 20078729
Alignment:
Q  59 ttttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattat-aatgaaaagtagttgttgtattttaatggtggagattgaaa 157  Q
    ||||||||| || |||| ||||||| |||  | | ||||||||||||||||||||||  ||  ||||||||||||||||||||| || | |||||||| |    
T  20078868 ttttttcaaatggaatcgcaaccattaaacttaaaagagaaaatgagaattaaattaagaaaaaaaagtagttgttgtattttattgatagagattgaca 20078769  T
Q  158 atggagaaaactcgagaaaattttcaatggagaggatcca 197  Q
    |||||||||  | |||||||||||||||| |||| |||||    
T  20078768 atggagaaagttggagaaaattttcaatgaagagaatcca 20078729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 25778521 - 25778607
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataa 118  Q
    |||||||| ||| |||||||| | || |||||| ||||||||| |||||||| ||| |||| ||||||| ||||| |||||||||||    
T  25778521 attctctcaattgaaaattctctgaagtttttttaagtgaaatttcaaccataaaaaatgaaagagaaagtgagagttaaattataa 25778607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 45358025 - 45358121
Alignment:
Q  91 gagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggaga 190  Q
    ||||||||||||   ||| |||||| || ||||| | ||||||||||||||| |||| || |||||||||||||||| | |||| |||||| ||||||||    
T  45358025 gagagagaaaat---aatgaaattacaaggaaaaatggttgttgtattttaagggtgaagtttgaaaatggagaaaatttgagagaatttttaatggaga 45358121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 29638971 - 29638911
Alignment:
Q  56 aaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattat 116  Q
    ||||| ||| |||| |||||||||| || ||| |||||||||||||||  |||||||||||    
T  29638971 aaattcttttaagttaaatctcaacaattaaacatgagagagaaaatgtaaattaaattat 29638911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 19905475 - 19905613
Alignment:
Q  1 taaattattacgtggtgattgtattcttaacattctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaa 100  Q
    ||||||||||||||||||||||||||||   |||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19905475 taaattattacgtggtgattgtattcttgggattctct--attaaaaattctttcaagttttttcaagtgaaatctcaaccatcaaatatgagagagaaa 19905572  T
Q  101 atgagaattaaattataatgaaaagtagttgttgtatttta 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19905573 atgagaattaaattataatgaaaagtagttgttgtatttta 19905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 19905739 - 19905857
Alignment:
Q  171 gagaaaattttcaatggagaggatccaagtcccgtatctacaacccgatctcttatctacgagttaagatcttatcaatttatttttctctccatttcat 270  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||  |||||||||||||||    
T  19905739 gagaaaattttcaatggagaggatccaagtcctgtatctacaacccaatctcttatctacgagttaagatcttctcaatttatcgttctctccatttcat 19905838  T
Q  271 ccatttgaaaagatataga 289  Q
    |||||||||||||||||||    
T  19905839 ccatttgaaaagatataga 19905857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 31938204 - 31938041
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||| ||| |||||||| | || |||| ||| |||||||||||||||||||  |||||||||||| ||||||||||||||||||| ||||||||||    
T  31938204 attctctctatttaaaattctct-aagttttctcatgtgaaatctcaaccatcaatcatgagagagaaagtgagaattaaattataatg-aaagtagttg 31938107  T
Q  132 ttgtattttaa-tggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatcc 196  Q
    |  |||||||| ||||  ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  31938106 taatattttaattggtaaagattgaaaatggagaaaatttgagaaaattttcaatggagaggatcc 31938041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 30762950 - 30762788
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| | |||| | |||  |||| |||||||||||||||||||| ||||| ||||||||||||        |||||||| ||||| | | |     
T  30762950 attctctccattgagaattttctcatgttttctcaagtgaaatctcaaccattaaataagagagagaaaat--------aattataaagaaaaattgata 30762859  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaagtcc 202  Q
      | |||||| || |||| ||| ||||||||||||||  || |||| ||||||||||||| ||||||||||    
T  30762858 gcggattttagtgatggatattaaaaatggagaaaacctgaaaaaaatttcaatggagagaatccaagtcc 30762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 38396998 - 38397059
Alignment:
Q  229 acgagttaagatcttatcaatttatttttctctccatttcatccatttgaaaagatatagac 290  Q
    |||||||||||| || || |||||||||||||||||||||||| ||||| | ||||||||||    
T  38396998 acgagttaagatattctccatttatttttctctccatttcatcaatttggagagatatagac 38397059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 30827730 - 30827681
Alignment:
Q  141 aatggtggagattgaaaatggagaaaactcgagaaaattttcaatggaga 190  Q
    |||| |||||||||||||||||||||||| |||| ||||||||| |||||    
T  30827730 aatgatggagattgaaaatggagaaaacttgagagaattttcaacggaga 30827681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 4809540 - 4809632
Alignment:
Q  62 tttcaagtgaaatctcaaccatcaaatatgagagagaaaa-tgagaattaaattataatgaaaagtagttgttgtattttaatggtggagatt 153  Q
    |||||| | |||| |||||||||||| || ||||| |||| | ||| ||||||||||| |||||||||||  || ||||||||||| ||||||    
T  4809540 tttcaaataaaatttcaaccatcaaacattagagaaaaaaataagagttaaattataaagaaaagtagttagtgaattttaatggtagagatt 4809632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 36070296 - 36070263
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttc 65  Q
    |||||||||||| |||||||||||||||||||||    
T  36070296 attctctccattgaaaattctttcaaattttttc 36070263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 527903 - 528066
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| |||||||| | || |||| ||| ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||    
T  527903 attctctccattgaaaattctctaaagttttctcatgtggaatctcaaccatcaatcatgagagagaaagtgagaattaaattataatgaaaagtggttg 528002  T
Q  132 ttgta-ttttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggat 194  Q
    ||||| ||||||| ||||| ||||||||||||||||| | ||||||||||| ||||||||||||    
T  528003 ttgtatttttaatagtggaaattgaaaatggagaaaatttgagaaaatttttaatggagaggat 528066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 40032413 - 40032247
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| |||||| | | || |||| ||| ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||    
T  40032413 attctctccattgaaaattgtcttaagttttctcatgtggaatctcaaccatcaatcatgagagagaaagtgagaattaaattataatgaaaagtggttg 40032314  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    |||||||||||||||| ||||||||||||||||||| | || |||| |||||||||| | |||||||    
T  40032313 ttgtattttaatggtgtagattgaaaatggagaaaatttgaaaaaaatttcaatggaaatgatccaa 40032247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 23930325 - 23930450
Alignment:
Q  54 tcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaa-gtagttgttgtattttaatggtggagat 152  Q
    ||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  23930325 tcaaattttcttaagtagaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaatttggttgttgtattttaatggtggagat 23930424  T
Q  153 tgaaaatggagaaaactcgagaaaat 178  Q
    |||||||||||||||||  |||||||    
T  23930425 tgaaaatggagaaaacttaagaaaat 23930450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 40 - 198
Target Start/End: Complemental strand, 15536391 - 15536237
Alignment:
Q  40 cattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattt 139  Q
    |||| |||||||| ||||||||| ||||||| ||||||||| || ||| |||||||||||| |||||||||||||| ||   ||||  ||||||||||||    
T  15536391 cattgaaaattctgtcaaattttctcaagtggaatctcaacaattaaacatgagagagaaattgagaattaaattaaaa---aaag--gttgttgtattt 15536297  T
Q  140 taatggtggagattgaaaatggagaaaac-tcgagaaaattttcaatggagaggatccaa 198  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  15536296 taatggtgaagattgaaaatggagaaaacttagagaaaattttcaatggagagaatccaa 15536237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 18341584 - 18341707
Alignment:
Q  44 aaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaat 143  Q
    ||||||||| ||||||||||  ||||| | |||||| ||||||| ||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  18341584 aaaaattctctcaaatttttctaagtggattctcaatcatcaaacatgagagagaaaatgagaattaaaaaataaagaaaaatagttgttgtattttaat 18341683  T
Q  144 ggtggagattgaaaatggagaaaa 167  Q
    | |||||||| |||||||||||||    
T  18341684 gttggagattaaaaatggagaaaa 18341707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 40205245 - 40205092
Alignment:
Q  52 tttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggaga 151  Q
    |||||| |||| || | |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||  ||  |||||||| ||||||    
T  40205245 tttcaagttttctccattgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtgggttttaatgatggaga 40205146  T
Q  152 ttgaaaatggagaaaactcg-agaaaattttcaatggagaggatccaagtcccg 204  Q
    || ||||||||||||||| | | |||| ||||||||| |||||||||| |||||    
T  40205145 ttaaaaatggagaaaacttgaaaaaaaatttcaatggggaggatccaaatcccg 40205092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 44309553 - 44309676
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||| ||  |||||  ||||    
T  44309553 attctctccattaaaatttctttcaatttttttaaagtgaaatctcaaccatcaaatatgggagaggaaatgaaaattaaattaaaagtaaaagaggttg 44309652  T
Q  132 ttgtattttaatggtggagattga 155  Q
     ||||||| || |||| |||||||    
T  44309653 gtgtatttaaacggtgtagattga 44309676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 47148320 - 47148445
Alignment:
Q  73 atctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcga 172  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||| | || | |||||||||||| || ||| | || |||||||||| ||    
T  47148320 atctcaaccatcaaacatgagagataaaatgaaaattaaattataaagaaaagtggctgatatattttaatggtagaaattaagaacggagaaaacttga 47148419  T
Q  173 gaaaattttcaatggagaggatccaa 198  Q
    || || ||| ||||||||| ||||||    
T  47148420 gagaaattttaatggagagaatccaa 47148445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 22545202 - 22545131
Alignment:
Q  128 gttgttgtattttaatggtggagattgaaaatggagaaaac-tcgagaaaattttcaatggagaggatccaa 198  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  22545202 gttgttgtattttaatggtgaagattgaaaatggagaaaacttagagaaaattttcaatggagagaatccaa 22545131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 50154197 - 50154081
Alignment:
Q  51 ctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggag 150  Q
    ||||||| |||||||| ||||||| | |||||| | | |||| ||||||| ||||| ||||||||||| ||||||| |||| ||  |||||||| |||||    
T  50154197 ctttcaagttttttcatgtgaaattttaaccattagacatgatagagaaagtgagagttaaattataaagaaaagtggttgatgagttttaatgatggag 50154098  T
Q  151 attgaaaatggagaaaa 167  Q
    ||| ||||| |||||||    
T  50154097 attaaaaattgagaaaa 50154081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 34643989 - 34644055
Alignment:
Q  57 aattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaa 123  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||| ||||    
T  34643989 aattttctcaagtgaaatctcaactatcaaacatgaaagagaaaataagaattaaattataaagaaa 34644055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 44317925 - 44317994
Alignment:
Q  46 aaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaatta 115  Q
    ||||||| |||| |||| | ||||| || ||||||||||||| || || |||||||||| ||||||||||    
T  44317925 aaattctctcaatttttcttaagtgtaaactcaaccatcaaaaataagtgagaaaatgaaaattaaatta 44317994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 8710903 - 8710943
Alignment:
Q  245 tcaatttatttttctctccatttcatccatttgaaaagata 285  Q
    ||||||||||  |||||||||||| ||||||||||||||||    
T  8710903 tcaatttattagtctctccatttcttccatttgaaaagata 8710943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 36447760 - 36447594
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| |||||||| ||||||||||||| || ||||||||||||||||  |||||||||||| ||| |||||||||||| | | || |||| |    
T  36447760 attctctccattgaaaattctctcaaattttttcatgtaaaatctcaaccatcaatcatgagagagaaagtgataattaaattatactaacaaatagtag 36447661  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||  |||||||||||    
T  36447660 ttgtattttaatggtgaagattgaaaatggagaaaattgaagaaaattttcaataaagaggatccaa 36447594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 12164464 - 12164632
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaa--tgagaattaaattataatgaaaagtagt 129  Q
    |||||||||||| |||||||| |||| | ||  |||||| |||||||||||||||| |||||||||| ||  |||||| |||||||||||||||| ||||    
T  12164464 attctctccattgaaaattctctcaagtcttcacaagtggaatctcaaccatcaaacatgagagagagaaagtgagaaataaattataatgaaaaatagt 12164563  T
Q  130 tgttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    ||||||||||||| | ||||||||||||||  ||||||||  |||||||||||||||||||| ||||||    
T  12164564 tgttgtattttaaagatggagattgaaaataaagaaaacttcagaaaattttcaatggagagaatccaa 12164632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 7719790 - 7719661
Alignment:
Q  69 tgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaac 168  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||  ||  ||||||||||||| ||| ||||||||||||||    
T  7719790 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtgatttttaatggtggatattaaaaatggagaaaac 7719691  T
Q  169 tcgagaaaattttcaatggagaggatccaa 198  Q
    | || ||| ||||||||| |||||||||||    
T  7719690 ttgaaaaagttttcaatgaagaggatccaa 7719661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 28234659 - 28234755
Alignment:
Q  59 ttttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattga 155  Q
    |||| ||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||||    
T  28234659 ttttctcatgtggaatctcaaccatcaatcatgagagagaaaatgagaattaaattataatgaaaagtgattgttgtattttaaccgtggagattga 28234755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 14913568 - 14913649
Alignment:
Q  36 tctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattata 117  Q
    |||||||| |||||||| | || |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14913568 tctccattgaaaattctcttaagttttctcaagtgaaatctcaaccatcaaacatgagagagaaagtgagaattaaattata 14913649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 15405374 - 15405420
Alignment:
Q  69 tgaaatctcaaccatcaaatatgagagagaaaatgagaattaaatta 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  15405374 tgaaatctcaaccatcaaatatgagagagaaaatgagtattaaatta 15405420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 3737103 - 3737173
Alignment:
Q  48 attctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataa 118  Q
    ||||| |||| || ||||||||| |||||||||||||||| |||||||| ||| ||| |||||||||||||    
T  3737103 attctctcaagttatttcaagtggaatctcaaccatcaaacatgagagacaaattgataattaaattataa 3737173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 29340913 - 29340972
Alignment:
Q  230 cgagttaagatcttatcaatttatttttctctccatttcatccatttgaaaagatataga 289  Q
    |||||||||||||| || ||||||| ||||||||||||||| |||||| | |||||||||    
T  29340913 cgagttaagatcttctccatttattattctctccatttcattcatttggagagatataga 29340972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 15405420 - 15405486
Alignment:
Q  94 agagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatg 160  Q
    |||||||||||| ||||||||| |||||||||| |||  ||  ||||||||||||||||| ||||||    
T  15405420 agagaaaatgagtattaaattacaatgaaaagtggttagtgggttttaatggtggagattaaaaatg 15405486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 14913958 - 14914026
Alignment:
Q  129 ttgttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatcca 197  Q
    |||||||||||||| | |||||||| ||||| ||||||||| || ||||   |||||||||||||||||    
T  14913958 ttgttgtattttaacgatggagattaaaaatagagaaaacttgaaaaaaaaatcaatggagaggatcca 14914026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 36282559 - 36282694
Alignment:
Q  48 attctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtg 147  Q
    ||||| |||| |||| | || ||||||||||||| ||||| ||  |||||||||  | | ||||||||  | |||||||||| |  | |||||||   ||    
T  36282559 attctctcaatttttcttaaatgaaatctcaaccttcaaacatatgagagaaaactaaagttaaattactaagaaaagtagtaggagcattttaaccatg 36282658  T
Q  148 gagattgaaaatggagaaaactcgagaaaattttca 183  Q
     ||||||||||||||||||| |||| ||||||||||    
T  36282659 tagattgaaaatggagaaaagtcgacaaaattttca 36282694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 35607364 - 35607324
Alignment:
Q  85 aaatatgagagagaaaatgaga-attaaattataatgaaaa 124  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  35607364 aaatatgagagagaaaatgagatattaaattataaagaaaa 35607324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 7243963 - 7243797
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||| ||| |||||| | | ||||||| ||| |||||||||||||||||||  |||||| ||||| ||| ||||||||||||| ||| ||||||||    
T  7243963 attctctctattgaaaattttcttaaattttctcatgtgaaatctcaaccatcaatcatgagaaagaaagtgaaaattaaattataacgaatagtagttg 7243864  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    |||||||||||| ||| ||||||||||||||||||| |  ||||||||||||| |||||||||||||    
T  7243863 ttgtattttaatagtgaagattgaaaatggagaaaattgaagaaaattttcaacggagaggatccaa 7243797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 30467275 - 30467145
Alignment:
Q  68 gtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaa 167  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||| ||||| || |||||||||||||||||||    
T  30467275 gtgaaatctcaaccatcaaatatgagagagaaagtgaaaattaaattataaagaaaagtggttgttgtattataatgatgaagattgaaaatggagaaaa 30467176  T
Q  168 ctcgagaaaattttcaatggagaggatccaa 198  Q
     |  ||| |||||||||||||||| ||||||    
T  30467175 tttcagagaattttcaatggagagaatccaa 30467145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 38829052 - 38828918
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    ||||||||  || |||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||     
T  38829052 attctctcagttgaaaattctctcaaattttctcaagtggaatctcaaccattaaatatgagagagaaaataagaattaaattataatgaaaattggtta 38828953  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaa 167  Q
    |||||||||||| ||| | |||||||||||||||||    
T  38828952 ttgtattttaat-gtgaaaattgaaaatggagaaaa 38828918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 23690329 - 23690175
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    ||||||| |||| |||||||| ||||||||| ||||||| ||||||||| || ||| |||||||||||| | |||||||||||| ||   ||||  ||||    
T  23690329 attctctacattgaaaattctgtcaaattttctcaagtggaatctcaacaattaaacatgagagagaaattcagaattaaattaaaa---aaag--gttg 23690235  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaac-tcgagaaaattttcaatggaga 190  Q
    |||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||    
T  23690234 ttgtattttaatggtgaagattgaaaatgaagaaaacttagagaaaattttcaatggaga 23690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 37244873 - 37244997
Alignment:
Q  64 tcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggag 163  Q
    ||||||| |||||| || || ||| |||||||||||| |||||||||||||||||  |||| | |||||||||||||||||||| |||||||||||| ||    
T  37244873 tcaagtggaatctccacaattaaacatgagagagaaagtgagaattaaattataa--aaaaatggttgttgtattttaatggtgaagattgaaaatgaag 37244970  T
Q  164 aaaactcgagaaaattttcaatggaga 190  Q
    |||| |  |||||||||||||||||||    
T  37244971 aaaagttcagaaaattttcaatggaga 37244997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 3447716 - 3447816
Alignment:
Q  69 tgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaac 168  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||| ||   || |||||||||||||||||| ||||||||||||||    
T  3447716 tgaaatctcaaccattaaatatgagagagaaaatgagtgttaaattataaagaaaagtggtcaatggattttaatggtggagattaaaaatggagaaaac 3447815  T
Q  169 t 169  Q
    |    
T  3447816 t 3447816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 24324417 - 24324257
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| ||||||||  ||| |||| ||| ||| |||||||||||||||  |||||||||||| ||| ||||||    ||||||||||||||||    
T  24324417 attctctccattgaaaattct--caagttttctcatgtggaatctcaaccatcaatcatgagagagaaagtgataattaa----taatgaaaagtagttg 24324324  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    ||||||||||||||| |||| |||||||||| |||| | ||||||||||||||| |||| |||||||    
T  24324323 ttgtattttaatggttgagaatgaaaatggataaaatttgagaaaattttcaattgagaagatccaa 24324257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 5330710 - 5330584
Alignment:
Q  72 aatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcg 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||  ||  ||||| |||| |||||| ||||||||||||| | |    
T  5330710 aatctcaaccatcaaatatgaaagagaaaatgagaattaaattataaagaaaagtggttagtgggttttagtggtagagattaaaaatggagaaaatttg 5330611  T
Q  172 agaaaattttcaatggagaggatccaa 198  Q
    | |||| ||||||||||||| ||||||    
T  5330610 aaaaaaatttcaatggagagaatccaa 5330584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 32429516 - 32429598
Alignment:
Q  116 taatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32429516 taatgaatagtggttgttatattttaatggtggagattgaaaatggagaaaacttgagaaaattttcaatggagaggatccaa 32429598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 32429154 - 32429241
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaa--gtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattata 117  Q
    |||||||||||| |||||||| |||| ||||||||   ||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  32429154 attctctccattgaaaattctctcaagttttttcatatgtggaatctcaaccatcaattatgagagagaaagtgagaattaaattata 32429241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 2158520 - 2158453
Alignment:
Q  102 tgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaact 169  Q
    |||||||||||||| || ||||| |  |||||||||||||||||||||||||||||||||||||||||    
T  2158520 tgagaattaaattacaaagaaaaatgattgttgtattttaatggtggagattgaaaatggagaaaact 2158453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 29229025 - 29229083
Alignment:
Q  231 gagttaagatcttatcaatttatttttctctccatttcatccatttgaaaagatataga 289  Q
    ||||||||||| | || ||||||| ||||||| |||||||||||| |||||||||||||    
T  29229025 gagttaagatcctctccatttattattctctcgatttcatccattcgaaaagatataga 29229083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 6563829 - 6563888
Alignment:
Q  84 caaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaat 143  Q
    |||| |||| ||||||| ||| ||||||||||||| ||||| || |||||||||||||||    
T  6563829 caaacatgaaagagaaattgaaaattaaattataaagaaaaataattgttgtattttaat 6563888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 54776989 - 54776863
Alignment:
Q  72 aatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcg 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||  ||  ||||| |||| |||||| ||||||||||||||| |    
T  54776989 aatctcaaccatcaaatatgaaagagaaaatgagaattaaattataaagaaaagtggttagtgggttttagtggtagagattaaaaatggagaaaacttg 54776890  T
Q  172 agaaaattttcaatggagaggatccaa 198  Q
    |||||| ||||||||||||| ||||||    
T  54776889 agaaaaatttcaatggagagaatccaa 54776863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 12907438 - 12907285
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    ||||| |||||| |||||||  |||| |||| | ||||| ||| |||||||| ||| |||||||| ||| |||||||||| ||||||| ||||||  |||    
T  12907438 attctttccattgaaaattccctcaagttttcttaagtgtaatttcaaccattaaacatgagagaaaaagtgagaattaagttataataaaaagtgcttg 12907339  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaat 185  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  12907338 ttgtattttaaaggtggagattgaaaatggaaaaaacttgagaaaattttcaat 12907285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 47804209 - 47804048
Alignment:
Q  34 tctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgtt 133  Q
    |||||||||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||| | || |||||| ||||||| ||| ||||||| |||| |    
T  47804209 tctctccattgaaaattctctcaatttttctcaagtggaatctcaaccatcaaatatgagaaacaagatgagagttaaatt-taaagaaaagtggttggt 47804111  T
Q  134 gtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    || ||| ||||||| | ||||||||||||||||| | |||  |||||||||||||||| ||||||    
T  47804110 gtgtttaaatggtgaatattgaaaatggagaaaaattgag--aattttcaatggagagaatccaa 47804048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 12906621 - 12906567
Alignment:
Q  144 ggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||    
T  12906621 ggtggagattgaaaatggaaaaaacttgagaaaattttcaatagagagaatccaa 12906567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 29586254 - 29586299
Alignment:
Q  231 gagttaagatcttatcaatttatttttctctccatttcatccattt 276  Q
    ||||||||||| | || ||||||| |||||||||||||||||||||    
T  29586254 gagttaagatcatctccatttattattctctccatttcatccattt 29586299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 33632743 - 33632796
Alignment:
Q  234 ttaagatcttatcaatttatttttctctccatttcatccatttgaaaagatata 287  Q
    |||||||| | || ||||||| |||||||||||||||||||||| | |||||||    
T  33632743 ttaagatcctctccatttattattctctccatttcatccatttggagagatata 33632796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 54433093 - 54433126
Alignment:
Q  69 tgaaatctcaaccatcaaatatgagagagaaaat 102  Q
    |||||||||||||||||||||||| |||||||||    
T  54433093 tgaaatctcaaccatcaaatatgaaagagaaaat 54433126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 5472568 - 5472676
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| |||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  5472568 attctctccattgaaaattctctcaagttttctcaagtgaaatctcaatcatcaaacatgagagagaaagtgagaattaaattataatgaaaagtcgttg 5472667  T
Q  132 ttgtatttt 140  Q
    |||| ||||    
T  5472668 ttgtgtttt 5472676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 5472699 - 5472774
Alignment:
Q  128 gttgttgtattttaatggtggagattgaaaatggagaaaactcgagaaaattttcaatggagaggatccaagtccc 203  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  5472699 gttgttgtgttttaatggtggagattgaaaatgaagaaaacttgagaaaattttcaatggagaggattcaagtccc 5472774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 35619507 - 35619377
Alignment:
Q  32 attctctccatt-aaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattat--aatgaaaagtag 128  Q
    |||||||||||| ||||||||| |||| |||| | ||||| |||||||||||| ||| |||||| ||||| |||||||||||||||  ||  |||||| |    
T  35619507 attctctccattgaaaaattctctcaagttttcttaagtggaatctcaaccattaaacatgagatagaaagtgagaattaaattataaaaaaaaaagtgg 35619408  T
Q  129 ttgttgtattttaatggtggagattgaaaat 159  Q
    |||||||||||||| ||||||||||||||||    
T  35619407 ttgttgtattttaacggtggagattgaaaat 35619377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 23850116 - 23850024
Alignment:
Q  82 atcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagattgaaaatggagaaaactcgaga 174  Q
    ||||||||||||||||||| ||||| ||| ||||||| |||||||  |||| ||||||||||||| |||||||||||||||||||||| ||||    
T  23850116 atcaaatatgagagagaaagtgagagttagattataaagaaaagtgattgtggtattttaatggtagagattgaaaatggagaaaacttgaga 23850024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 24294292 - 24294405
Alignment:
Q  32 attctctccattaaaaattct-ttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagtt 130  Q
    |||||||||||| |||||||| || ||||||| ||||| ||| ||| |||||||||| ||||| || ||||||| ||||||||||||| ||||||| |||    
T  24294292 attctctccattgaaaattctctttaaattttctcaagcgaagtctaaaccatcaaacatgagtga-aaaatgaaaattaaattataaagaaaagtggtt 24294390  T
Q  131 gttgtattttaatgg 145  Q
    |||||| || |||||    
T  24294391 gttgtacttaaatgg 24294405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 22027259 - 22027126
Alignment:
Q  35 ctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatga--gagagaaaatgagaattaaattataatgaaaagtagttgt 132  Q
    ||||||| |||||| | | |||| |||||||||||  |||| ||||||||||| ||||  |||||||||| | | ||||||||||| ||||||||||||     
T  22027259 ctctccactaaaaaatttctcaatttttttcaagttgaatcacaaccatcaaacatgacagagagaaaataaaagttaaattataaagaaaagtagttg- 22027161  T
Q  133 tgtattttaatggtggagattgaaaatggagaaaa 167  Q
    ||| ||||||   |||||| |||||||||||||||    
T  22027160 tgtgttttaaaactggagaatgaaaatggagaaaa 22027126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 38499737 - 38499819
Alignment:
Q  71 aaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttgttgtattttaatggtggagatt 153  Q
    ||||||||| ||| ||| || ||||||||||| | ||||||||||||| ||||| | ||| |||||| |||||||||||||||    
T  38499737 aaatctcaatcattaaacattagagagaaaataataattaaattataaggaaaaatggttattgtatattaatggtggagatt 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 13073084 - 13073037
Alignment:
Q  151 attgaaaatggagaaaactcgagaaaattttcaatggagaggatccaa 198  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  13073084 attgaaaatggagaaaacttgagaaaattgtcaatggagagaatccaa 13073037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 54166679 - 54166789
Alignment:
Q  66 aagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtag-ttgttgtattttaatggtggagattgaaaatggaga 164  Q
    |||||||||||||||||||||| |||||||||  ||| ||| |||||||||||  ||||   | ||| | | ||||||| |||||||||||||||||||     
T  54166679 aagtgaaatctcaaccatcaaacatgagagag--aataagagttaaattataaaaaaaaaacgattgatttgttttaatagtggagattgaaaatggagg 54166776  T
Q  165 aaactcgagaaaa 177  Q
    ||| | |||||||    
T  54166777 aaagttgagaaaa 54166789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 52347563 - 52347512
Alignment:
Q  64 tcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaatta 115  Q
    ||||||| |||||||| || | || |||||||||||||||||||||||||||    
T  52347563 tcaagtggaatctcaatcacccaacatgagagagaaaatgagaattaaatta 52347512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 6773 - 6630
Alignment:
Q  32 attctctccattaaaaattctttcaaattttttcaagtgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagtagttg 131  Q
    |||||||||||| |||||||| || | |||| ||||||| |||| ||||||||||| || ||||||||||||||||||||||||| |  | |  | ||||    
T  6773 attctctccattgaaaattctctctagttttctcaagtggaatcccaaccatcaaacataagagagaaaatgagaattaaattattaaaatacatggttg 6674  T
Q  132 ttgtattttaatggtggagattgaaaatggagaaaactcgagaa 175  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||    
T  6673 ttgtattttaatgatggatattgaaaatggagaaaacttgagaa 6630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University