View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7298_low_6 (Length: 247)

Name: NF7298_low_6
Description: NF7298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7298_low_6
NF7298_low_6
[»] chr6 (20 HSPs)
chr6 (5-85)||(13860714-13860794)
chr6 (10-87)||(14027369-14027446)
chr6 (7-95)||(13890694-13890782)
chr6 (10-86)||(13943272-13943348)
chr6 (161-230)||(14017452-14017521)
chr6 (161-229)||(13890590-13890658)
chr6 (10-90)||(14112777-14112857)
chr6 (10-95)||(13470610-13470695)
chr6 (161-229)||(13872734-13872802)
chr6 (161-230)||(13943387-13943456)
chr6 (161-230)||(14027493-14027562)
chr6 (161-230)||(14049280-14049349)
chr6 (161-230)||(13470505-13470574)
chr6 (161-230)||(13860602-13860671)
chr6 (161-230)||(14087035-14087104)
chr6 (161-230)||(14112886-14112955)
chr6 (25-90)||(14049174-14049239)
chr6 (9-90)||(13872831-13872912)
chr6 (10-54)||(14017381-14017425)
chr6 (26-78)||(14086912-14086964)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 13860794 - 13860714
Alignment:
Q  5 tttctaaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgata 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  13860794 tttctaaaattatttccgctgaggttcaaatattgtaattgttgcaactccaccaatgacttgtggatatcacccctgata 13860714  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 14027369 - 14027446
Alignment:
Q  10 aaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatata 87  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14027369 aaaattatttctactgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccactgatata 14027446  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 13890782 - 13890694
Alignment:
Q  7 tctaaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatataaaagttat 95  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  13890782 tctaaaattatttctgttgaggttcaaatattgtaactgttgcaactccatcaatgacttgtggatatcacccatgatataaaatttat 13890694  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 13943272 - 13943348
Alignment:
Q  10 aaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatat 86  Q
    |||||||||||  |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  13943272 aaaattatttctactgaagttcaaatattgtaactgttgcaactccatcagtgacttgtggatatcaccgctgatat 13943348  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 14017452 - 14017521
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  14017452 tgaaggttgagcataagtacatgaccagtgaggttgctgcaaccaattccataccattcgcagcaatctt 14017521  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 13890658 - 13890590
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatct 229  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  13890658 tgaaggtcgagcttaagtacatgaccagtgaggttgctgcaaccaattccataccattcgcagcaatct 13890590  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 14112777 - 14112857
Alignment:
Q  10 aaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatataaaa 90  Q
    |||||||||||| |||||||||||||| | |||||| |||||||| |||| |||||||||||||||||| |||||||||||    
T  14112777 aaaattatttccactgaggttcaaatactttaattgctgcaactctatcagtgacttgtggatatcaccactgatataaaa 14112857  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 13470695 - 13470610
Alignment:
Q  10 aaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatataaaagttat 95  Q
    |||||||||||| |  ||||||||||| | |||||| |||||||||||||||||||||||||||||||| || |||||||| ||||    
T  13470695 aaaattatttccaccaaggttcaaatactttaattgctgcaactccatcaatgacttgtggatatcaccactcatataaaatttat 13470610  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 13872802 - 13872734
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatct 229  Q
    ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  13872802 tgaagatcgagcataagtacatggccagtgaggttgctgcaacgaattccataccattggcagcaatct 13872734  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 13943387 - 13943456
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||| ||||||| |||||||||||||| ||||||||| |||||||| | |||||||||||||||||    
T  13943387 tgaaggtcgagcataattacatgaccagtgacgttgctgcaaccaattcccttccattggcagcaatctt 13943456  T

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Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 14027493 - 14027562
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||| |||||||||||||| |||||||  |||||||| |||||||||||||||| |||||||||||    
T  14027493 tgaaggtcgagcataagtacatggccagtgatattgctgcaaccaattccataccattcgcagcaatctt 14027562  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 14049280 - 14049349
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    ||||| || |||||||||||||| |||||||  |||||||| ||||||||||||||||||||||||||||    
T  14049280 tgaagatcgagcataagtacatggccagtgatattgctgcaaccaattccataccattggcagcaatctt 14049349  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 13470574 - 13470505
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||  ||||||| ||||||| |||||||||||||||| |||||||| | |||||||||||||||||    
T  13470574 tgaaggttgagcataattacatgatcagtgaggttgctgcaaccaattcccttccattggcagcaatctt 13470505  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 13860671 - 13860602
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||| ||||||| |||||||||||| | ||||||||| |||||||| | |||||||||||||||||    
T  13860671 tgaaggtcgagcataattacatgaccagttacgttgctgcaaccaattcccttccattggcagcaatctt 13860602  T

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Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 14087035 - 14087104
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||  |||||||||||||| |||||||||||| |||| |||||||| | |||||||||||||||||    
T  14087035 tgaaggttgagcataagtacatggccagtgaggttgttgcaaccaattcccttccattggcagcaatctt 14087104  T

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Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 14112886 - 14112955
Alignment:
Q  161 tgaaggtcaagcataagtacatgaccagtgaggttgctgcagccaattccataccattggcagcaatctt 230  Q
    |||||||| ||||||| |||||||| ||||| ||||||||| |||||||| | |||||||||||||||||    
T  14112886 tgaaggtcgagcataattacatgacaagtgacgttgctgcaaccaattcccttccattggcagcaatctt 14112955  T

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Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 14049174 - 14049239
Alignment:
Q  25 gaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatataaaa 90  Q
    |||||||||||| | || ||| ||||||||||||||||| |||||||||||||| | |||||||||    
T  14049174 gaggttcaaatactttagttgctgcaactccatcaatgagttgtggatatcaccacggatataaaa 14049239  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 13872912 - 13872831
Alignment:
Q  9 taaaattatttccgctgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccgctgatataaaa 90  Q
    |||||| ||| || |||| ||||||||| | |||||| | ||||||||||| |||||||| || |||||| | |||||||||    
T  13872912 taaaataattcccactgaagttcaaatactttaattgcttcaactccatcactgacttgtcgacatcacctccgatataaaa 13872831  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 14017381 - 14017425
Alignment:
Q  10 aaaattatttccgctgaggttcaaatattgtaattgttgcaactc 54  Q
    ||||||| |||  |||| |||||||||||||||||||||||||||    
T  14017381 aaaattaattctactgaagttcaaatattgtaattgttgcaactc 14017425  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 14086912 - 14086964
Alignment:
Q  26 aggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcacc 78  Q
    |||||||| || | ||||| |||||||||||||| ||| ||||||||||||||    
T  14086912 aggttcaagtactttaatttttgcaactccatcagtgagttgtggatatcacc 14086964  T

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