View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_high_10 (Length: 271)
Name: NF7299_high_10
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_high_10 |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 28008545 - 28008468
Alignment:
| Q |
194 |
gagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
271 |
Q |
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| T |
28008545 |
gagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtgacaaaacaa |
28008468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 28007822 - 28007898
Alignment:
| Q |
195 |
agttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
271 |
Q |
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| T |
28007822 |
agttcagatctgctccagttccaacttgctccagttttcatgttcttttgacggatgagcgacacgtggcaaaacaa |
28007898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 12215194 - 12215271
Alignment:
| Q |
194 |
gagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
271 |
Q |
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| T |
12215194 |
gagttcagatttgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
12215271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 12215916 - 12215842
Alignment:
| Q |
194 |
gagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaa |
268 |
Q |
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| T |
12215916 |
gagttcagatctgctccagttccaacttgctccacttttcctgttcttttgacggatgagcgacacgtggcaaaa |
12215842 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 1636308 - 1636385
Alignment:
| Q |
194 |
gagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
271 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1636308 |
gagttcagatctgctccagttccaacttactccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
1636385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 1637032 - 1636955
Alignment:
| Q |
194 |
gagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
271 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1637032 |
gagttcagatctgctctagttcaaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
1636955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 41827286 - 41827363
Alignment:
| Q |
193 |
ggagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaa |
271 |
Q |
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||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| ||||||||||||||| | |||||| |
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| T |
41827286 |
ggagttcagatctgctccatttccaacttgccttagttttcctgttc-tttgacagatgagcgacacgtgtcgaaacaa |
41827363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 40923760 - 40923823
Alignment:
| Q |
130 |
aaacacaattattgctgggttaaacatgttctaataatataagtgaaaacacaatgaatccctg |
193 |
Q |
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| T |
40923760 |
aaacacaattattgctgggttaaacatgttctaataatataagtgaaaacacaatgaatccctg |
40923823 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 40923704 - 40923757
Alignment:
| Q |
21 |
ttctgtaatagagttgtaatagagttttaatgttcaaacttcaaatatgaactt |
74 |
Q |
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| T |
40923704 |
ttctgtaatagagttgtaatagagttttaatgttcaaacttcaaatatgaactt |
40923757 |
T |
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