View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7299_high_12 (Length: 250)
Name: NF7299_high_12
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48960626 - 48960385
Alignment:
| Q |
1 |
aacttactcattcatgattactactaaacgttatgaacatgttagagtatcatgcatgagatgaaagattatctgcacaaaatgtttgaccttcacactt |
100 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48960626 |
aacttactcattcattattactgctaaacgttatgaacatgttagagtatcatgcatgagatgaaagattatccgcacaaaatgtttgaccttcacactt |
48960527 |
T |
|
| Q |
101 |
atatgcatgcaagaaggaaagaaatagaaactgcaattctcgaattgttttgaaagtggcgagcgacgtgtaccagtatcagagaacaaaatgtttgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48960526 |
atatgcatgcaagaaggaaagaaatagaaactgcaatcctcgaattgttttgaaagtggcgagcgacgtgtaccagtatcagagaacaaaatgtttgcat |
48960427 |
T |
|
| Q |
201 |
tagagacatgtgaaaacatagttagcagacgaagttcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48960426 |
tagagacatgtgaaaacatagttagcagacgaagttcatctc |
48960385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University