View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_high_14 (Length: 239)
Name: NF7299_high_14
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 5681674 - 5681895
Alignment:
| Q |
3 |
atatataacataaaacaagaagnnnnnnncataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgacttggatcttcttcttccta |
102 |
Q |
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| T |
5681674 |
atatctaacataaaacaagaagtttttttcataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgtcttggatcttcttcttccta |
5681773 |
T |
|
| Q |
103 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatggattgatgataattgaaaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5681774 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatggattgatgataattgaaaac |
5681873 |
T |
|
| Q |
203 |
ataaattcctagctagctatat |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
5681874 |
ataaattcctagctagctatat |
5681895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 5706726 - 5706947
Alignment:
| Q |
3 |
atatataacataaaacaagaagnnnnnnncataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgacttggatcttcttcttccta |
102 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5706726 |
atatctaacataaaacaagaagtttttttcataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgtcttggatcttcttcttccta |
5706825 |
T |
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| Q |
103 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatggattgatgataattgaaaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5706826 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatggattgatgataattgaaaac |
5706925 |
T |
|
| Q |
203 |
ataaattcctagctagctatat |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
5706926 |
ataaattcctagctagctatat |
5706947 |
T |
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