View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7299_high_2 (Length: 567)
Name: NF7299_high_2
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 28916239 - 28915689
Alignment:
| Q |
18 |
aggattaggttaccttggtcatcgaatttgtaggtggtttcgaatcctacaaaattcggatccatagcatgaagttcggtagttgtttgattctacca-- |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28916239 |
aggattaggttaccttggtcatcgaatttgtaggtggtttcgaaatcaacaaaattcggatccatagcatgaagttcggtagttgtttgattctacaaca |
28916140 |
T |
|
| Q |
116 |
-tggattttgtgtttgagtgaaatgaaacattatgaaaaagatgtagatattttgacaagaaaatatgcacttagcatcacaatccaaaaagtgatttnn |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916139 |
atggtttttgtgtttgagtgaaatgaaacattatgaaaaaggtgtagatattttgacaagaaaatatgcacttagcatcacaatccaaaaagtgatttaa |
28916040 |
T |
|
| Q |
215 |
nnnnnnnnnnntgagtggagatttgggtattggaagaacgaagccattttccctctttcttcatgtgcatgtgactgtgtccttcctactttatgctttg |
314 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916039 |
aaacaaaaa--tgagtggagatt-gggtattggaagaacgaagccattttcccacttttttcatgtgcatgtgactgtgtccttcctactttatgctttg |
28915943 |
T |
|
| Q |
315 |
gatcaagctcacaatttcatggtgagagtacgttttttgcacaagtgatgcatgggaccacctggtccataaccctacaaactaataccaaatagatgta |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28915942 |
gatcaagctcacaatttcatggtgagagtacgttttttgcacaagtgatgcatgggaccacatggtccataaccctacaaactaataccaaatagatgta |
28915843 |
T |
|
| Q |
415 |
catttagattggttttagattattataatcaaaataaaatgttttaagtcagatattgacctttcgcttcagattggttggtgcagatcaat--tactgt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
28915842 |
catttagattggttttagattattataatcaaaataaaaagttttaagtaagatcttgacggttcgcttcagattggttggtgcagatcaattatattgt |
28915743 |
T |
|
| Q |
513 |
gtacatgcag----taactgtgttatatccaaatccatgtagattcatctcact |
562 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
28915742 |
gtacatgcagtaactaactgtgttatatccaaattcatgtagataaatctcact |
28915689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 300 - 552
Target Start/End: Original strand, 6561474 - 6561728
Alignment:
| Q |
300 |
ctactttatgctttggatcaagctcacaatttcatggtgagagtacgttttttgcacaagtgatgcatgggaccacctggtccataaccctacaaactaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6561474 |
ctactttatgctttggatcaagctcacaattttatggtgagagtacgttttc-gcacaagtgatgcatgggaccacctgctccataaccctacaaactaa |
6561572 |
T |
|
| Q |
400 |
taccaaatagatgtacatttagattggttttag---attattataatcaaaataaaatgttttaagtcagatattgacctttcgcttcagattggttggt |
496 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||| || |||| |||| ||||||| |
|
|
| T |
6561573 |
taacaaatggatgtacacttagattggttttagattattattataatcaaaataaaaagttttaagtaagatcttgaccgtttgcttgagatcggttggt |
6561672 |
T |
|
| Q |
497 |
gcagatcaattactgtgtacatgcagtaactgtgttatatccaaatccatgtagat |
552 |
Q |
| |
|
||||||||||||| |||| || ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
6561673 |
gcagatcaattaccgtgtccacgcaataaatgtgttatatccaaatccatgtagat |
6561728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 6561290 - 6561431
Alignment:
| Q |
157 |
tgtagatattttgacaagaaaatatgcacttagcatcacaatccaaaaagtgatttnnnnnnnnnnnnntgagtggagatttgggtattggaagaacgaa |
256 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||| |
|
|
| T |
6561290 |
tgtagatattttgacaagaaagcatgcacttagcatcacaatccaaaaagtgatttaaaaacaaaaaaatgaatggagatt-gggcattggaagaacgaa |
6561388 |
T |
|
| Q |
257 |
gccattttccctctttcttcatgtgcatgtgactgtgtccttc |
299 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6561389 |
gccattttcccacttttttcatgtgcatgtgactgtgtccttc |
6561431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 41596651 - 41596521
Alignment:
| Q |
18 |
aggattaggttaccttggtcatcgaatttgtaggtggtttcgaatcctacaaaattcggatccatagcatgaagttcggtagttgtttgattctaccatg |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
41596651 |
aggattaagttaccatggtcatcgaatttgtaggttgtttcgaatccgacaaaattcggatccatagcatgaagttggttagttgtttgattctacgatg |
41596552 |
T |
|
| Q |
118 |
gattttgtgtttgagtgaaatgaaacattat |
148 |
Q |
| |
|
| ||||||||| |||||||||||||||||| |
|
|
| T |
41596551 |
gtttttgtgttcaagtgaaatgaaacattat |
41596521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 27324976 - 27324910
Alignment:
| Q |
20 |
gattaggttaccttggtcatcgaatttgtaggtggtttcgaatcctacaaaattcggatccatagca |
86 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
27324976 |
gattaggttaacatggtcatcgaatttgcaggttgtttcgaatccaacaaaatttggatccatagca |
27324910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 7805797 - 7805717
Alignment:
| Q |
465 |
agatattgacctttcgcttcagattggttggtgcagatcaattactgtgtacatgcagtaactgtgttatatccaaatcca |
545 |
Q |
| |
|
|||| |||||| ||| |||||||||| || | ||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
7805797 |
agattttgaccattcacttcagattgaatgctacagatcaattactacgtggatgcaataactgtgttatatccaaatcca |
7805717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University