View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_high_4 (Length: 490)
Name: NF7299_high_4
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 228 - 472
Target Start/End: Original strand, 14435046 - 14435290
Alignment:
| Q |
228 |
tgggtgttggagatttggaagaaagaataataattgagggggttgaattgaaatttgaactatatgatgaagcatgatcaattatataatgaaaagggtt |
327 |
Q |
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| T |
14435046 |
tgggtgttggagatttggaagaaagaataataattgagggggttgaattgaaatttgaactatatgatgaagcatgatcaattatataatgaaaagggtt |
14435145 |
T |
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| Q |
328 |
gaattgaagttgaacttacatatgatgaagatggcagcattccaaccaccctttttggttgtggaatgatggatgagggagttacttttgctcttgcttg |
427 |
Q |
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| T |
14435146 |
gaattgaagttgaacttacatatgatgaagatggcagcattccaaccaccctttttggttgtggagtgatggatgagggagttacttttgctcttgcttg |
14435245 |
T |
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| Q |
428 |
ggctatctgccataatttggtggtgaatttggtttaggatgatga |
472 |
Q |
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| T |
14435246 |
ggctatctgccataatttggtgattaattttgtttaggatgatga |
14435290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 14434832 - 14435006
Alignment:
| Q |
1 |
caagataagaatcagctatgaagccaccaagcaaagggaatagtgaggagacaccaacccatgtgttcacgtttttcactgctgtggttgttggttcatt |
100 |
Q |
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| T |
14434832 |
caagataagaatcagctatgaagccaccaagcaaagggaatagtgaggagacaccaacccatgtgttcacgtttttcactgctgtggttgttggttcatt |
14434931 |
T |
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| Q |
101 |
cagaaattttgtgaggtagtttatgagatttgatgccaaaccttggtatgcaaatctctcagcaaattccacaac |
175 |
Q |
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| T |
14434932 |
cagaaattttgtgaggtagtttatgagatttgatgccaaaccttggtatgcaaatctctcagcaaattccacaac |
14435006 |
T |
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